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Atlas of Oral Microbiology: From Healthy Microflora to Disease PDF

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ATLAS OF ORAL MICROBIOLOGY This page intentionally left blank ATLAS OF ORAL MICROBIOLOGY FROM HEALTHY MICROFLORA TO DISEASE Edited by X Z uedong hou Y L uqing i State Key Laboratory of Oral Diseases, West China School/Hospital of Stomatology, Sichuan University, Chengdu, China AMSTERDAM • BOSTON • HEIDELBERG • LONDON NEW YORK • OXFORD • PARIS • SAN DIEGO SAN FRANCISCO • SINGAPORE • SYDNEY • TOKYO Academic Press is an imprint of Elsevier Academic Press is an imprint of Elsevier 32 Jamestown Road, London NW1 7BY, UK 525 B Street, Suite 1800, San Diego, CA 92101-4495, USA 225 Wyman Street, Waltham, MA 02451, USA The Boulevard, Langford Lane, Kidlington, Oxford OX5 1GB, UK Copyright © 2015 Zhejiang University Press. Published by Elsevier Inc. All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage and retrieval system, without permission in writing from the Publisher. Details on how to seek permission, further information about the Publisher’s permissions policies and our arrangements with organizations such as the Copyright Clearance Center and the Copyright Licensing Agency, can be found at our website: www.elsevier.com/permissions. This book and the individual contributions contained in it are protected under copyright by the Publisher (other than as may be noted herein). Notices Knowledge and best practice in this field are constantly changing. As new research and experience broaden our understanding, changes in research methods, professional practices, or medical treatment may become necessary. Practitioners and researchers must always rely on their own experience and knowledge in evaluating and using any information, methods, compounds, or experiments described herein. In using such information or methods they should be mindful of their own safety and the safety of others, including parties for whom they have a professional responsibility. To the fullest extent of the law, neither the Publisher nor the authors, contributors, or editors, assume any liability for any injury and/or damage to persons or property as a matter of products liability, negligence or otherwise, or from any use or operation of any methods, products, instructions, or ideas contained in the material herein. ISBN: 978-0-12-802234-4 British Library Cataloguing-in-Publication Data A catalogue record for this book is available from the British Library Library of Congress Cataloging-in-Publication Data A catalog record for this book is available from the Library of Congress For information on all Academic Press publications visit our website at http://store.elsevier.com/ Typeset by TNQ Books and Journals www.tnq.co.in Printed and bound in the United States of America Contents Contributors � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � vii Preface � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � � �ix 1. Basic Biology of Oral Microbes 1.1 Cytological Basis of Microorganisms . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1 1.2 Microbial Morphology . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1 1.3 Microbial Cell Structure. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .1 1.4 Microbial Physiology. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .8 1.5 Microbial Genetics . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .9 2. Techniques for Oral Microbiology 2.1 Smear and Stain Techniques . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .15 2.2 Isolation, Incubation, and Identification Techniques . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .21 2.3 Microscopy Techniques. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .27 2.4 Oral Microecology Techniques. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .32 2.5 Oral Microbiome Techniques. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .35 3. Supragingival Microbes 3.1 Gram-Positive Bacteria. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .41 3.2 Gram-Negative Bacteria. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .62 4. Subgingival Microbes 4.1 Gram-Positive Bacteria. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .67 4.2 Gram-Negative Bacteria. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .72 5. Oral Mucosal Microbes 5.1 Gram-Positive Bacteria. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .95 5.2 Gram-Negative Bacteria. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .100 5.3 Mycoplasma. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .103 5.4 Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .104 5.5 Virus . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .107 v This page intentionally left blank Contributors Lei Cheng Wei Qiu Xingqun Cheng Yu Sun Meng Deng Haohao Wang Xiaohong Deng Suping Wang Qin Du Yan Wang Yang Ge Yuan Wei Qiang Guo Liying Xiao Jinzhi He Xiaorong Xiao Wenxiang Jia Xin Xu Di Kang Kaiyu Yang Yu Kuang Jumei Zeng Chenglong Li Keke Zhang Mingyun Li Wenling Zhang Yan Li Xin Zheng Yuqing Li Han Zhou Chengcheng Liu Shuangshuang Zhou Xianghong Liu Xuedong Zhou Chuan Lu Yuan Zhou Xian Peng Zhu Zhu vii This page intentionally left blank Preface The human body is home to a diverse range of microorganisms, including a variety of bacteria, archaea, fungi, and viruses, estimated to outnumber human cells in a healthy adult by 10-fold. The importance of characterizing human microbiota for understanding health and disease is highlighted by the recent launch of the Human Microbiome Proj- ect (HMP) by the National Institutes of Health. Changes in colonization sites or imbalance of normal microflora may lead to the occurrence of the disease. The mouth harbors a diverse, abundant, and complex microbial community and oral microorganisms are often closely related to many infectious diseases. This book is keeping up with the advanced edge of the international research field of microbiology. For the first time, it innovatively gives us a complete description of the oral microbial systems according to different oral ecosys- tems. This book collects a large number of oral microbial pictures, including full-color pictures, colonies photos, and electron microscopy photos. It is by far the most abundant oral microbiology atlas and consists of the largest number of pictures. In the meantime, it also describes in detail a variety of experimental techniques, including microbiologi- cal isolation, culture, and identification. It is a monograph with strong practical function. This book is the first professional and comprehensive color atlas of oral microbiology and it has important aca- demic and application value. The editors and writers have long been engaged in teaching and research work in oral microbiology and oral microecology; they had finished the first color atlas of the oral microbial morphology and ultrastructure, which was written in Chinese. They all have a solid theoretical foundation and rich experience in oral microbiological research. This exceptional book deserves a broad audience, and it will meet the needs of researchers, clinicians, teachers, and students majoring in biology, stomatology, basic medicine, or clinical medicine. It can also be used to facilitate teaching and international academic exchanges. ix

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Atlas of Oral Microbiology provides a complete description of the oral microbial systems, illustrating them with a large variety of bacteria culture images and electron microscopy photos. This work is by far the most thorough and best illustrated oral microbiology atlas available. In addition, it al
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