Table Of Content

Contributing Authors, Volumes 55-59 \ Brown CK, 58:555-85 Davies DG, 56:187-209 Ah Tow L, 58:649-90 Briissow H, 55:283-303 Davies JE, 57:1-27 Ajello L, 56:315-44 Bureau J-F, 59:279-98 de Gier J-W, 59:329-55 Akiyama Y, 59:211-31 de Gourville EM, 59:587-635 Dehio C, 58:365-90 Anderson JB, 56:139-65 AndersoJnP , 58:183-205 & Delepelaire P, 58:61 1-47 Angulo A, 55:531-60 Campbell JW, 55:305-32 Demain AL, 58:1—42 Aravind L, 55:709-42 Caporale LH, 57:467-85 DePriest PT, 58:273-301 Arst HN Jr, 58:425-51 Capy P, 57:275-99 de Vos WM, 58:43-73 Atlas RM, 56:167-85 Cascales E, 59:451-85 Dilks K, 59:91-111 Atmakuri K, 59:451-85 Cawthon AG, 58:391-424 Dowdle WR, 59:587-635 Ausmees N, 57:225-47 Chacon O, 58:329-63 Draper GC, 56:567-97 Chang Y, 57:609-39 Duque E, 56:743-68 Christie PJ, 59:451-85 Dussurget O, 58:587-610 B Clark-CurtisJsE , 57:517-49 Dutilh BE, 59:191-209 Cogoni C, 55:381-406 Bamford DH, 56:521-38 Barletta RG, 58:329-63 Cohan FM, 56:457-87 E Cohen GN, 59:1-17 Bashan A, 58:233-51 Bassler BL, 55:165-99 Cosma CL, 57:641-76 Earhart CA, 58:555-85 Baumann P, 59:155-89 Cossart P, 58:587-610 Edberg SC, 55:201-34 Costerton JW, 56:187-209 Eitzen EM Jr, 55:235-53 Bayer FA, 58:521-54 Cowan DA, 58:649-90 Engel JN, 55:407-35 BeckwithJ , 55:21-48 Cowen LE, 56:139-65 Begley TJ, 59:357-77 Cox MM, 57:55i-77 Belaich J-P, 58:521-54 Cronan JE, 55:305-32; Bennett RJ, 59:233-55 57:203-24 Bermudez LE, 58:329-63 Fahey RC, 55:333-56 Currie CR, 55:357-80 Bliska JB, 59:69-89 Falkovitz L, 58:143-59 Brahic M, 59:279-98 Fast NM, 56:93-116 Brakhage AA, 56:433-55 Feil EJ, 55:561-90 D Breaker RR, 59:487-517 Fink DJ, 58:253-71 Brinkman FSL, 56:17-38 Daboussi M-J, 57:275-99 Finking R, 58:453-88 Brinton MA, 56:371—402 Daifuku R, 58:183-205 Fouet A, 55:647-71 Brody S, 58:489-519 Daugelavicius R, 56:521-38 Friedman DI, 57:101-23 Fry RC, 59:357-77 M Fuerst JA, 59:299-328 Jacobs-Wagner C, Macnab RM, 57:77-100 57:225-47 Magee PT, 55:743-72 Jahn CL, 56:489-520 Majdalani N, 59:379-405 G Jakubowski S, 59:45 1-85 Makarova KS, 55:709-42 Gallegos M-T, 56:743-68 Jazwinski SM, 56:769-92 Mann BJ, 56:39-64 Gascoigne NR, 55:531-60 Jendrossek D, 56:403-32 Marahiel MA, 58:453-88 Gee JM, 57:57-76 Jetten MSM, 58:99-117 Marczynski GT, 56:625-56 Ghazal P, 55:531-60 Johnson AD, 59:233-55 Mattick JS, 56:289-3 14 Gibson J, 56:345-69 Jorgensen BB, 55:105-37 McBride MJ, 55:49-75 Giovannoni SJ, 57:369-94 McCormicJkK , 55:77-104 Glorioso JC, 58:253-71 McVey Ward D, 56:237-61 Gober JW, 56:567-97 K Mendoza L, 56:315—-44 Godoy P, 56:743-68 Kaiser D, 58:75-98 Michiels T, 59:279-98 GogarteJnP , 56:263-87 Miller MB, 55:165-99 Kamhawi S, 55:453-83 Gottesman S, 58:303-28; KaplanJ , 56:237-61 Mock M, 55:647-71 59:379-405 Kassen R, 58:207-31 Moore PS, 57:609-39 Grabowski B, 57:487-516 Kawaoka Y, 59:553-86 MorrisseJyP , 59:257-77 Gross CA, 56:599-624, Kazmierczak BI, Mossel DA, 55:201-34 57:441-66 55:407-35 Mostov K, 55:407-35 Gruber TM, 57:441-66 Keeling PJ, 56:93-116 Murphy BJ, 57:323-42 Kelman Z, 57:487-516 Kent AD, 56:211-36 H Kew OM, 59:587-635 N Haddad A, 59:91-111 Klobutcher LA, 56:489-520 Nair SP, 57:29-55 Hancock REW, 56:17-38 Kohn LM, 56:139-65 Nechaev S, 57:301-22 Hand NJ, 59:91-111 Koonin EV, 55:709-42 Neidle EL, 58:119-42 Handrick R, 56:403-—32 Kowalchuk GA, 55:485-529 Newbold C, 55:673-707 Haque R, 56:39-64 Kreuzer KN, 59:43-67 Ng W-L, 57:57-76 Harrison MJ, 59:19-42 Krishnamoorthy V, Nystrém T, 58:161-81 Harshey RM, 57:249-73 59:45 1-85 Hartmann E, 59:91-111 Kumamoto CA, 59:113-—33 Harwood CS, 56:345-69 Kyes S, 55:673-707 O Hawley RJ, 55:235-53 Haydel SE, 57:517-49 O’Gara F, 59:257-77 Henderson B, 57:29-55 L Ohlendorf DH, 58:555-85 Hilario E, 56:263-87 Olendzenski L, 56:263-87 Lakin-Thomas PL, 58:489-5 19 Hinnebusch AG, 59:407-50 Ornston LN, 59:519-51 Lamed R, 58:521-54 Hogle JM, 56:677-702 Langfelder K, 56:433-55 Horrocks P, 55:673—707 Houben E, 59:329-355 LaRossa RA, 56:599-624 P Larrainzar E, 59:257—77 Howe RA, 56:657-75 Law M, 57:323-42 Pallansch MA, 59:587-635 Hsieh P, 57:579-608 Lawrence JG, 57:419-40 Parke D, 59:519-51 Huynen MA, 59:191-209 Leclerc H, 55:201-34 Parrish CR, 59:553-86 Levin PA, 57:125-54 Parsek MR, 57:677-701 Lindquist S, 56:703—41 Penalva MA, 58:425-51 Liti G, 59:135-53 Petri WA Jr, 56:39-64 Imlay JA, 57:395-418 Loeb LA, 58:183-205 Pizarro-Cerda J, 58:587-610 IngrahaJmL , 55:1-19 Louis EJ, 59:135-53 Pohlschréder M, 59:91-111 Ito K, 59:211-31 LuirinkJ , 59:329-55 Poranen MM, 56:521-38 Vv R Sen GC, 55:255-81 Senejani AG, 56:263-87 Rainey PB, 58:207-31 van Burik JH, §5:743-72 Severinov K, 57:301-22 Raivio TL, 55:591-624 Van Dyk TK, 56:599-624 Shapiro L, 56:625-56 Rall GF, 57:343-67 Van Ho A, 56:237-61 Sherman DR, 57:641-76 Ramakrishnan L, Vetting MW, 58:555-85 Shoham Y, 58:521-554 57:641-76 Viboud GI, 59:69-89 Shoukry NH, 58:391-424 Ramos JL, 56:743-68 Vinces MD, 59:113-33 Silhavy TJ, 55:591-624 Ramos-Gonzalez MI, von Heijne G, 59:329-55 Singh PK, 57:677-701 56:743-68 Smidt H, 58:43-73 Rappé MS, 57:369-94 Rawlings DE, 56:65-91 Smith GL, 57:323-42 Ww Snel B, 59:191-209 Reams AB, 58:119-42 Walker C, 58:391-424 Sohaskey CD, 55:139-63 Redpath S, 55:531-60 Walsh TR, 56:657-75 Spratt BG, 55:561-90 Reitzer L, 57:155-76 Wandersman C, 58:61 1-47 Stephen JR, 55:485-529 Rhodius V, 56:599-624 Ward JM, 57:29-55 Stoodley P, 56:187-209 RichardsoJnM, 57:57-76 Wayne LG, 55:139-63 Strous M, 58:99-117 Riley MA, 56:117-37 Wertz JE, 56:117-37 Struijk CB, 55:201-34 Ritz D, 55:21-48 Wilson M, 57:29-55 Summers WC, Robertson GT, 57:57-76 Winkler ME, 57:57-76 55:437-S1 Rojas A, 56:743-68 Winkler WC, 59:487-517 Sutter RW, 59:587-635 Romberg L, 57:125-54 Withey JH, 57:101-23 Roop RM II, 57:57-76 Witkin EM, 56:1-15 Rosenberg E, 58:143-59 1 Wosten HA, 55:625—46 Talbot NJ, 57:177-202 y S Tan M-W, 56:539-65 Sacks D, 55:453-83 Taylor JW, 56:315-44 Yarwood JM, 55:77-104 Samson LD, 59:357-77 Teran W, 56:743-68 Yonath A, 58:233-51 Sauer K, 56:187-209 Triplett EW, 56:211-36 Young DM, 59:519-51 Schlievert PM, 55:77-104 Schofield MJ, 57:579-608 U Z Schulz HN, 55:105-37 Segura A, 56:743-68 Uptain SM, 56:703-41 Zhaxybayeva O, 56:263-87 Chapter Titles, Volumes 55-59 Prefatory Chapters Learning to Fly Fish JL Ingraham Chances and Choices: Cold Spring Harbor 1944-1955 EM Witkin Gathering No Moss J Davies Pickles, Pectin, and Penicillin AL Demain Looking Back GN Cohen Animal Pathogens and Diseases Toxic Shock Syndrome and Bacterial Superantigens: An Update JK McCormick, JM Yarwood, PM Schlievert Nonreplicating Persistence of Mycobacterium tuberculosis LG Wayne, 55:139-63 CD Sohaskey Interaction of Bacterial Pathogens with Polarized Epithelium BI Kazmierczak, K Mostov, JN Engel Molecular Aspects of Parasite-Vector and Vector-Host Interactions in Leishmaniasis D Sacks, S Kamhawi 55:453-83 Recombination and the Population Structures of Bacterial Pathogens EJ Feil, BG Spratt 55:561-90 Anthrax M Mock, A Fouet 55:647-71 Bioterrorism: From Threat to Reality RM Atlas 56:167-85 Molecular Pathogenicity of the Oral Opportunistic Pathogen Actinobacillus actinomycetemcomitans B Henderson, SP Nair, JM Ward, M Wilson Brucella Stationary-Phase Gene Expression and Virulence RM Roop II, JM Gee, GT Robertson, JM Richardson, W-L Ng, ME Winkler Measles Virus 1998-2002: Progress and Controversy GF Rall 57:343-67 Molecular Genetics of Mycobacterium tuberculosis Pathogenesis JE Clark-Curtiss, 57:517-49 SE Haydel Kaposi’s Sarcoma—Associated Herpesvirus Immunoevasion and Tumorigenesis: Two Sides of the Same Coin? PS Moore, Y Chang 57:609-39 The Secret Lives of the Pathogenic Mycobacteria CL Cosma, 57:641-76 DR Sherman, L Ramakrishnan Herpes Vector-Mediated Gene Transfer in Treatment of Diseases of the Nervous System JC Glorioso, DJ Fink 58:253-71 Johne’s Disease, Inflammatory Bowel Disease, and Mycobacterium paratuberculosis O Chacon, 58:329-63 LE Bermudez, RG Barletta Molecular and Cellular Basis of Bartonella Pathogenesis C Dehio 58:365-90 Molecular Determinants of Listeria monocytogenes Virulence O Dussurget, 58:587-610 J Pizarro-Cerda, P Cossart The Genetics of the Persistent Infection and Demyelinating Disease Caused by Theiler’s Virus M Brahic, J-F Bureau, 59:279-98 T Michiels Applied Microbiology and Ecology Advances in the Bacteriology of the Coliform Group: Their Suitability as Markers of Microbial Water Safety H Leclerc, 55:201-34 DA Mossel, SC Edberg, CB Struijk A Community of Ants, Fungi, and Bacteria: A Multilateral Approach to Studying Symbiosis CR Currie 55:357-80 Ammonia-Oxidizing Bacteria: A Model for Molecular Microbial Ecology GA Kowalchuk, 55:485-529 JR Stephen Hydrophobins: Multipurpose Proteins HAB Wéosten 55:625—-46 Heavy Metal Mining Using Microbes DE Rawlings 56:65-91 Chapter Titles 679 Bacteriocins: Evolution, Ecology, and Application MA Riley, JE Wertz 56:117-37 On the Trail of a Cereal Killer: Exploring the Biology of Magnaporthe grisea NJ Talbot 57:177-202 The Uncultured Microbial Majority MS Rappé, 57:369-94 SJ Giovannoni Anaerobic Microbial Dehalogenation H Smidt, WM de Vos 58:43-73 Anaerobic Oxidation of Methane and Ammonium M Strous, 58:99-117 MSM Jetten Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3,4-Dioxygenase CK Brown, 58:555-85 MW Vetting, CA Earhart, DH Ohlendorf Bacterial Iron Sources: From Siderophores to Hemophores C Wandersman, 58:611-47 P Delepelaire Applications of Autofluorescent Proteins for In Situ Studies in Microbial Ecology E Larrainzar, F O'Gara, JP Morrissey Chemotherapy and Chemotherapeutic Agents Bacterial Fatty Acid Biosynthesis: Targets for Antibacterial Drug Discovery JW Campbell, 55:305-32 JE Cronan Jr. Bacteriophage Therapy WC Summers 55:437-51 Evolution of Drug Resistance in Candida albicans LE Cowen, 56:139-65 JB Anderson, LM Kohn The Prevalence and Mechanisms of Vancomycin Resistance in Staphylococcus aureus TR Walsh, RA Howe 56:657-75 Ribosomal Crystallography: Initiation, Peptide Bond Formation, and Amino Acid Polymerization are Hampered by Antibiotics A Yonath, A Bashan 58:233-51 Biosynthesis of Nonribosomal Peptides R Finking, 58:453-88 MA Marahiel Diversity and Systematics Big Bacteria HN Schulz, 55:105-37 BB Jorgensen What Are Bacterial Species? FM Cohan 56:457-87 Archaeal DNA Replication: Eukaryal Proteins in a Bacterial Context B Grabowski, 57:487-5 16 Z Kelman Chapter Titles The Ecology and Genetics of Microbial Diversity R Kassen, PB Rainey 58:207-31 Early Molecular Investigations of Lichen-Forming Symbionts: 1986-2001 PT DePriest 58:273-301 Endangered Antarctic Environments DA Cowan, L Ah Tow 58:649-90 Genetics and Physiology Roles of Thiol-Redox Pathways in Bacteria D Ritz, J Beckwith 55:21-48 Bacterial Gliding Motility: Multiple Mechanisms for Cell Movement over Surfaces MJ McBride 55:49-75 Quorum Sensing in Bacteria MB Miller, BL Bassler 55:165-99 Homology-Dependent Gene Silencing Mechanisms in Fungi C Cogoni 55:381-406 Periplasmic Stress and EFC Sigma Factors TL Raivio, TJ Silhavy 555::55 91-624 Horizontal Gene Transfer in Prokaryotes—Quantification and Classification EV Koonin, KS Makarova, L Aravind Inteins: Structure, Function, and Evolution JP Gogarten, AG Senejani, O Zhaxybayeva, L Olendzenski, E Hilario Genome Remodeling in Ciliated Protozoa CL Jahn, 56:489-520 LA Klobutcher Bacterial Chromosome Segregation GC Draper, 56:567-97 JW Gober Impact of Genomic Technologies on Studies of Bacterial Gene Expression V Rhodius, 56:599-624 TK Van Dyk, C Gross, RA LaRossa Control of Chromosome Replication in Caulobacter crescentus GT Marczynski, 56:625-56 L Shapiro Prions as Protein-Based Genetic Elements SM Uptain, 56:703—41 S Lindquist Growing Old: Metabolic Control and Yeast Aging SM Jazwinski 56:769-92 Molecular Pathogenicity of the Oral Opportunistic Pathogen Actinobacillus actinomycetemcomitans B Henderson, 57:29-55 SP Nair,J M Ward, M Wilson A Salvage Pathway for Protein Synthesis: tmRNA and Trans-Translation JH Withey, 57:101-23 DI Friedman Assembly Dynamics of the Bacterial Cell Division Protein FtsZ: Poised at the Edge of Stability L Romberg, PA Levin 57:125-54 Chapter Titles 681 Spatial and Temporal Control of Differentiation and Cell Cycle Progression in Caulobacter crescentus N Ausmees, 57:225-47 C Jacobs-Wagner Transposable Elements in Filamentous Fungi M-] Daboussi, P Capy 57:275-99 Bacteriophage-Induced Modifications of Host RNA Polymerase S Nechaevy, 57:301-22 K Severinov Gene Organization: Selection, Selfishness, and Serendipity JG Lawrence 57:419-40 Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space TM Gruber, CA Gross 57:441-66 Natural Selection and the Emergence of a Mutation Phenotype: An Update of the Evolutionary Synthesis Considering Mechanisms that Affect Genome Variation LH Caporale 57:467-85 Archaeal DNA Replication: Eukaryal Proteins in a Bacterial Context B Grabowski, 57:487-5 16 Z Kelman Molecular Genetics of Mycobacterium tuberculosis Pathogenesis JE Clark-Curtiss, 57:517-49 SE Haydel The Bacterial RecA Protein as a Motor Protein MM Cox 57:551-77 DNA Mismatch Repair: Molecular Mechanisms and Biological Function MJ Schofield, P Hsieh 57:579-608 Bacterial Biofilms: An Emerging Link to Disease Pathogenesis MR Parsek, PK Singh 57:677-701 Anaerobic Microbial Dehalogenation H Smidt, WM de Vos Signaling in Myxobacteria D Kaiser Anaerobic Oxidation of Methane and Ammonium M Strous, MSM Jetten 58:99-117 Selection for Gene Clustering by Tandem Duplication AB Reams, EL Neidle 58:119-42 Viral Error Catastrophe by Mutagenic Nucleosides JP Anderson, 58:183-205 R Daifuku, LA Loeb The Ecology and Genetics of Microbial Diversity R Kassen, PB Rainey 58:207-31 Ribosomal Crystallography: Initiation, Peptide Bond Formation, and Amino Acid Polymerization are Hampered by Antibiotics A Yonath, A Bashan 58:233-51 Herpes Vector-Mediated Gene Transfer in Treatment of Diseases of the Nervous System JC Glorioso, DJ Fink 58:253-71 The Small RNA Regulators of Escherichia coli: Roles and Mechanisms S Gottesman 58:303-28 Recent Advances in the Characterization of Ambient pH Regulation of Gene Expression in Filamentous Fungi and Yeasts MA Pejnalva, 58:425-51 HN Arst Jr. Chapter Titles Biosynthesis of Nonribosomal Peptides R Finking, 58:45 3-88 MA Marahiel Circadian Rhythms in Microorganisms: New Complexities PL Lakin-Thomas, 58:489-519 S Brody Biophysical Analyses of Designed and Selected Mutants of Pretocatechuate 3,4-Dioxygenase CK Brown, 58:555-85 MW Vetting, CA Earhart, DH Ohlendorf Bacterial Iron Sources: From Siderophores to Hemophores C Wandersman, 58:611-47 P Delepelaire Interplay Between DNA Replication and Recombination in Prokaryotes K”. Kreuzer 59:43-67 Diversity and Evolution of Protein Translocation M Pohlschréder, 59:91-111 E Hartmann, NJ Hand, K Dilks, A Haddad Cellular Functions, Mechanism of Action, and Regulation of FtsH Protease K Ito, Y Akiyama 59:211-31 Mating in Candida albicans and the Search for a Sexual Cycle RJ Bennett, 59:233-55 AD Johnson Genome-Wide Responses to DNA-Damaging Agents RC Fry, TJ Begley, LD Samson The Res Phosphorelay: A Complex Signal Transduction System N Majdalani, 59:379-405 S Gottesman Translational Regulation of GCN4 and the General Amino Acid Control of Yeast AG Hinnebusch 59:407-50 Regulation of Bacterial Gene Expression by Riboswitches WC Winkler, 59:487-517 RR Breaker Opportunities for Genetic Investigation Afforded by Acinetobacter baylyi, A Nutritionally Versatile Bacterial Species that is Highly Competent for Natural Transformation DM Young, D Parke, 59:519-51 LN Ornston Immunology Antigenic Variation at the Infected Red Cell Surface in Malaria S Kyes, P Horrocks, 55:673-707 C Newbold Kaposi’s Sarcoma—Associated Herpesvirus Immunoevasion and Tumorigenesis: Two Sides of the Same Coin? PS Moore, Y Chang 57:609-39 Chapter Titles 683 Cell-Mediated Immunity and the Outcome of Hepatitis C Virus Infection NH Shoukry, 58:391-424 AG Cawthon, C Walker Morphology, Ultrastructure, and Differentiation Bacterial Gliding Motility: Multiple Mechanisms for Cell Movement over Surfaces MJ McBride 55:49-75 Functions of Pseudomonas Porins in Uptake and Efflux REW Hancock, 56:17-38 FSL Brinkman Biofilms as Complex Differentiated Communities P Stoodley, K Sauer, 56:187-209 DG Davies, JW Costerton Type IV Pili and Twitching Motility JS Mattick 56:289-3 14 How Bacteria Assemble Flagella RM Macnab 57:77-100 Assembly Dynamics of the Bacterial Cell Division Protein FtsZ: Poised at the Edge of Stability L Romberg, PA Levin 57:125-54 Spatial and Temporal Control of Differentiation and Cell Cycle Progression in Caulobacter crescentus N Ausmees, C Jacobs-Wagner Bacterial Motility on a Surface: Many Ways to a Common Goal RM Harshey 57:249-73 Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space TM Gruber, CA Gross 57:441-66 Intracellular Compartmentation in Planctomycetes JA Fuerst 59:299-328 Biogenesis of Inner Membrane Proteins in Escherichia coli J Luirink, G von 59:329-55 Heijne, E Houben, J de Gier Biogenesis, Architecture, and Function of Bacterial Type IV Secretion Systems PJ Christie, K Atmakuri, V Krishnamoorthy, S Jakubowski, E Cascales Organismic Microbiology Microsporidia: Biology and Evolution of Highly Reduced Intracellular Parasites PJ Keeling, 56:93-116 NM Fast The Class Mesomycetozoea: A Heterogeneous Group of Microorganisms at the Animal-Fungal Boundary L Mendoza, 56:3 15-4 JW Taylor, L Ajello Chapter Titles