Table Of Content

Contributing Authors, Volumes 56-60 \ Brinkman FSL, 56:17-38 DanglJ L, 60:425-49 \h Tow L. 58:649-90 Brinton MA, 56:37 1-402 DaugelaviFius R, 56:52] \jeLl,l5 6:o3 15-44 Brody S, 58:489-519 DavDiG,e 5s6:1 87-209 AkivYa, m59a:2 11-31 BroCKw, 5n8:5 55-85 DavieJEs, 57:1-27 Allen L-AH, 60:167-85 Buckel W, 60:27-49 de Gier J-W, 59:329 \lmazan F, 60:211-30 Bureau J-F, 59:279-98 de Gourville EM AndersoJnB , 56:139-65 59:587-635 AndersoJnP , 58:183-205 ( Dehio C, 58:365—90 Andersson DI, 60:477-501 Delepelaire P, 58:611—47 Apicella MA, 60:167-85 ( aporale LH, 57:467-85 Demain AL. 58:1] Arst HN Jr, 58:425-51 ( “apy P, 57:275-99 DePriest PT, 58:273 \tlas RM, 56:167-85 ( ascaFlE, e59s:45 1-85 de Vos WM, 58:43-73 Atmakuri K, 59:45 1-85 ( awthon AG, 58:391-424 Dilks K, 59:91-111 Ausmees N, 57:225-47 ( hacO,o 58n:3 29-63 Ding S-W, 60:503 ( thang JH, 60:425-49 Dowdle WR, 59:587-635 ( haYn, 5g7:6 09-39 DowDnM. s60: 53 B ( hapman MR, 60:131-4 Draper GC, 56:56 samford DH, 56:521-38 ( hristie P] 59:45 1-85 Duque E.. 56:743-68 Barletta RG, 58:329-63 Clark-Curtiss JE, 57:51 - 49 Dussurget O, 58 S27 Barnett TC, 60:397-423 ( laverys J-P, 60:45 7 1-75 Dutilh BE, 59:19] Barnhart MM, 60:131 ( ‘ohan FM, 56:457-87 Bashan A, 58:233-51 ( sohen GN, 59:1-17 Basu P. 60:107-30 ( osma CL,5 7:641-76 E Baumann P, 59:155-89 ( sossart P, 58:587-610 Earhart CA. 58:555 saver EA, 58:521-54 ( osterton JW, 56:187-209 Enjuanes L, 60:2 Begley PJ, 59:357 ( owDaA, n58:6 49-90 Belaich J-P, 58:521-54 ( vowen LE, 56:139-65 Bennett RJ, 59:233-55 ( 10x MM, 57:551-77 I BermuLEd, e58z:32 9-63 CronJE,a 5n7:2 03-24 Falkovitz L. 58:143-—59 BieH,b 60l:2 55-80 FaNsM. t56: 93-116 Bliska JB, 59:69-89 Fink DJ, 58:253-71 Brahic M, 59:279-98 D Finking R. 58:453-88 Brakhage AA, 56:433-55 Daboussi M J, 57:275-99 Fisher EJ, 60:425-49 Breaker RR, 59:487-517 Daifuku R, 58:183-205 Friedman DI, 57:101-—23 Fry RC, 59:357-77 J M Fuerst JA, 59:299-328 Jacobs-Wagner C, 57:225—4 Macnab RM, 57:77-100 Jahn CL, 56:489-520 Maguire ME, 60:187-209 Jakubowski: S, 59:45 1-85 Maiden MC], 60:561-88 G Jazwinski SM, 56:769-92 Majdalani N, 59:379-405 Gallegos M-T, 56:743-68 Jendré yssek D, 56:403-—32 Mann BJ, 56:39-64 Gee JM, 57:57-76 Jetten MSM, 58: Varahiel MA, 58:453-88 Georgiou G, 60:373-95 Johnson AD, 59: Marcezynski GT, 56:625-56 GibsonJ , 56:345-69 Martin B, 60:451-75 Giovannoni SJ, 57:369-94 MattJiS, c56k:2 89-314 Glorioso JC, 58:253 71 K VicLendon MK, 60:167-85 Gober JW, 56:567-97 Kaguni JM, 60:351 VicVey Ward D, 56:237-61 Godoy P, 56:743-68 Kaiser D, 58:75-98; Viendoza L, 56:315—4+4 Gogarten JP, 56:263-87 60:1-25 Michiels T, 59:279-98 Golding BT, 60:27-49 KaplanJ , 56:237-61 Vole BM, 60:425-49 Goldman WE, 60:281-303 Kassen R, 58:207-31 Moore PS, 57:609-39 Gottesman S, 58:303-28; Kawaoka Y, 59:553-86 Morrissey JP, 59:257-77 59:379-405 Keeling PJ, 56:93-116 Murphy BJ, 57:323-42 Grabowski B, 57:487-516 Kelman Z, 57:487-516 Grant SR, 60:425—49 Kent AD, 56:211-36 Gross CA, 56:599-624: Kew OM, 59:587-635 N 57:441-66 Klobutcher LA, 56:489 Nair SP, 57:29-55 Gruber TM, 57:441-66 Kofoid E, 60:477-501 Nechaev S, 57:301-—22 Kohn LM, 56:139-65 Neidle EL, 58:119-42 Kreuzer KN, 59:43-67 Ng W-L, 57:57-76 H Krishnamoorthy V, 59:45 1-85 Nohmi T, 60:231-53 Haddad A, 59:91-111 Krumholz LR, 60:149-66 Nystrém T, 58:161-81 Hancock REW, 56:17-38 Kugelberg E, 60:477-501 Hand NJ, 59:91-111 KumamotCoA , 59:113-33 Handrick R, 56:403-32 O Haque R, 56:39-64 O’Gara F, §9:257-77 Harrison MJ, 59:19-42 Ohlendorf DH, 58:555-85 Harshey RM, 57:249-73 g7 akin- Thomas PL, Olendzenski L, 56:263-+ Hartmann EF, 59:91-111 58:489-159 Oremland RS, 60:107-30 Harwood CS, 56:345-69 vamed R, 58:521-54 Ornston LN, 59:519-51 I laydel SE, 57:517-49 angfelder K, 56:433-55 OrtinJ , 60:305-26 HeitmanJ , 60:69-105 aRossa RA, 56:599-624 Henderson B, 57:29-55 aarrainzar E, 59:257-77 Hilario E, 56:263—87 saw M, 57:323-42 P Hinnebusch AG, 59:407-50 Hogle JM, 56:677-702 awrence JG, 57:419-40 Pallansch MA, 59:587-635 Houben E, 59:329-355 ee PA, 60:373-95 Papp-Wallace KM, evin PA, 57:125-54 60:187-209 Howe RA, 56:657-75 JA F, 60:503-31 Hsieh P, 57:579-608 Parke D, 59:519-51 An X, 60:69-105 Parra F, 60:305-26 Huynen MA, 59:191-209 Andquist S, 56:703—41 Parrish CR, 59:553-86 Liti G, 59:135-53 Parsek MR, 57: -701 Loeb LA, 58:183-—205 Penalva MA, 58:425-51 Louis EJ, 59:135-5: Petri WA Jr, 56:39-64 Imlay JA, 57:395-418 LuirinkJ , 59:329-55 Pizarro-CerdaJ , 58:587-610 Ito K, 59:211-31 Lynch M, 60:327-49 Pohlschréder M, 59:91-111 Contributing Authors Poranen MM, 56:521-38 Schofield MJ, 57:579-608 \ Prudhomme M, 60:45 1 Scott JR, 60:397-423 Van Dyk TK, 56:599-624 Segura A, 56:743-68 Van Ho A, 56:237-61 Senejani AG, 56:263-87 Vetting MW, 58:555-85 Severinov K, 57:301-22 Viboud GI, 59:69-89 ainey PB, 58:207-31 Shapiro L, 56:625-56 Vinces MD, 59:113-33 all GF, 57:343-67 Sherman DR, 57:641-76 von Heijne G, 59:329-55 amakrishnan L, 57:641-76 Shoham Y, 58:521-554 amos JL, 56:743-68 Shoukry NH, 58:391-424 amos-Gonzalez MI, 56:743-68 Singh PK, 57:677-701 W appé MS, 57:369-94 Smidt H, 58:43 Wagner-Dobler I, 60:255-80 appley e CA, 60:281-303 Smith GL, 57:323-42 WalkerC , 58:391-424 Rawlings DF, 56:65-91 Snel B, 59:191-209 Wall JD, 60:149-66 Reams AB, 58:119-42; Sola I, 60:211-30 Walsh TR, 56:657-75 60:477-501 Stolz JF, 60:107-30 Wandersman C, 58:61 1-47 Reitzer L, 57:155-76 Stoodley P, 56:187-209 Ward JM, 57:29-55 Rhodius V, 56:599-624 Strous M, 58:99-117 Wertz JE, 56:117-37 RichardsoJnM , 57:57-76 Sutter RW, 59:587-635 Wilson M, 57:29-55 Riley M \, 56:117 37 Winkler ME, 57:57-76 RobertsoGnT , 57:5 6 T Winkler WC, 59:487-517 Rojas A, 56:743-68 Withey JH, 57:101-23 Romberg L, 57:125-—54 Talbot NJ, 57:177-202 Witkin EM, 56:1-15 Roop RM II, 57:57-—76 lan M-W, 56:539-65 Rosenberg E, 58:143-59 ‘Taylor JW, 56:3 15-44 Roth JR, 60:477-501 Teran W, 56:743-68 Y Triplett EW, 56:211-36 Yonath A, 58:233-51 Tullman-Ercek D, Young DM, 59:519-51 S 60:373-95 Samson LD, 59:35 SantJMi, n60i:10 7-30 Z Sauer K, 56:187-209 l Zhaxybayeva O, 56:263-8 Schneemann A, 60:5 1-67 Uptain SM, Zuniga S, 60:211-30 Contributing Author Chapter Titles, Volumes 56-60 Prefatory Chapters Chances and Choices: Cold Spring Harbor 1944-1955 EM Witkin Gathering No Moss J Davies Pickles, Pectin, and Penicillin AL Demain Looking Back GN Cohen \ Microbial Genetic Journey D Kaiser Animal Pathogens and Diseases Bioterrorism: From Threat to Reality RM Atlas Molecular Pathogenicity of the Oral Opportunistic Pathogen Actinobacillus actinomycetemcomitans fenderson, SP Nair, JM Ward, MI Wilson Brucella Stationary-Phase Gene Expression and Virulence RM Roop I] JM Gee GT Robertson, JM Richardson, W-L Ne, ME Winkler Measles Virus 1998-2002: Progress and Controversy Molecular Genetics of Mycobacterium tuberculosis Pathogenesis Kaposi's Sarcoma—Associated Herpesvirus Immunoevasion and Tumorigenesis: ‘Two Sides of the Same Coin? PS Moore, Y Chang The Secret Lives of the Pathogenic Mycobacteria CL Cosma, DR Sherman, L Ramakrishnan Herpes Vector-Mediated Gene Transfer in [reatment of Diseases of the Nervous System JC Glorioso, DJ Fink Johne’s Disease, Inflammatory Bowel Disease, and Mycobacterium paratuberculosis O Chacon, LE Bermudez, RG Barletta Molecular and Cellular Basis of Bartonella Patiiogenesis C Dehio 365-90 Molecular Determinants of Listeria monocytogenes Virulence O Dussurget, 8:587-610 J Pizarro-Cerda, P Cossart The Genetics of the Persistent Infection and Demyelinating Disease Caused by Theiler’s Virus M Brahic, J-F Bureau, T Michiels Biochemical Aspects of Coronavirus Replication and Virus-Host Interaction L, Enjuanes, F Almazan, I Sola, S Zuniga Defining Virulence Genes in the Dimorphic Fungi CA Rappleye, WE Goldman Applied Microbiology and Ecology Heavy Metal Mining Using Microbes DE Rawlings Bacteriocins: Evolution, Ecology, and \pplication VA Riley,J E Wertz On the Trail of a Cereal Killer: Exploring the Biology of Magnaporthe grisea NJ Talbot The Uncultured Microbial Majority MS Rappé, S] Giovannoni Anaerobic Microbial Dehalogenation H Smidt, WM de Vos Anaerobic Oxidation of Methane and \mmonium M Strous, MSM Jetten Biophysical Analyses of Designed and Selected Mutants of Protocatechuate 3, 4-Dioxygenase CK Brown, mT MW Vetting, CA Earhart, DH Ohlendort Bacterial Iron Sources: From Siderophores to Hemophores C Wandersman, P | Jelepe laire \pplications of Autofluorescent Proteins fot In Situ Studies in Microbial Ecology E. Larrainzar, F O’Gara, JP Morrissey Radical Enzymes in Anaerobes W Buckel, BT Ge Iding \rsenic and Selenium in Microbial Metabolism JF Stolz, P Basu, 60:107 JM Santini, RS Oremland Uranium Reduction JD Wall, 60:149 LR Krumholz Environmental Biology of the Marine Roseobacter Lineage I Wagner-Dobler, H Biebl Chemotherapy and Chemotherapeutic Agents Evolution of Drug Resistance in Candida albicans I | Cowen, JB Anderson, LM Kohn The Prevalence and Mechanisms of Vancomycin Resistance in Staphylococcus aureus CR Walsh, RA He Ribosomal Crystallography: Initiation, Peptide Bond Formation, and Amino Acid Polymerization are Hampered by Antibiotics \ Yonath, A Bashan Biosynthesis of Nonribosomal Peptides R Finking, MA Marahiel Diversity and Systematics What Are Bacterial Species? FM Cohan Archaeal DNA Replication: Eukaryal Proteins in a Bacterial Context B Grabowski, Z Kelman The Ecology and Genetics of Microbial Diversity R Kassen, PB Rainey Early Molecular Investigations of Lichen-Forming Symbionts: 1986-2001 PT DePriest Endangered Antarctic Environments DA Cowan L Ah Tov Environmental Biology of the Marine Roseobacter Lineage 1 Wagner-Dobler, H Biebl Multilocus Sequence Typing of Bacteria MC] Maiden Genetics and Physiology Inteins: Structure, Function, and Evolution JP Gogarten, AG Senejani, O Zhaxybayeva, L Olendzenski, E Hilario Genome Remodeling in Ciliated Protozoa CL Jahn, LA Klobutcher Bacterial Chromosome Segregation GC Draper, JW Gober Chapter Titles Impact of Genomic Technologies on Studies of Bacterial Gene Expressic mn V Rhodius, TK Van 56:599-624 Dyk, C Gross, RA LaRossa Control of Chromosome Replication in Caulobacter crescentus GT Marczynski, L. Shapiro Prions as Protein-Based Genetic Elements SM Uptain, S Lindquist Grow ing ¢ Yld: Metabolic Control and Yeast \ging SM Jazwinski Molecular Pathogenicity of the Oral Opportunistic Pathogen Actinobacillus Aactinomycetemcomitans Bl lenders« mn, SP Nair, JM Ward, M Wilson \ Salvage Pathway for Protein Synthesis: tmRNA and Trans- Translation JH Withey, DI Friedman Assembly Dynamics of the Bacterial Cell Division Protein FtsZ: Poised at the | dge of Stability L Romberg, PA Levin Spatial and Temporal Control of Differentiation and Cell Cycle Progression in Caulobacter crescentus N Ausmees, C Jacobs-Wagnet [ransp|o sable Elements in Filamentous Fungi$ M-J Daboussi, P Cap Bacteriophage-Induced Modifications of Host RNA Polymerase S Nechaev, K Severinoy Gene Organization: Selection, Selfishness, and Serendipity JG Lawrence Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space CM Gruber, CA Gross Natural Selection and the Emergence of a Mutation Phenotype: An Update of the Evolutionary Synthesis Considering Mechanisms that Affect Genome Variation LH Caporale \rchaeal DNA Replication: Eukaryal Proteins in a Bacterial Context B Grabowski, Z Kelman Molecular Genetics of Mycobacterium uberculosis Pathogenesis JE Clark-Curtiss, SE Haydel Che Bacterial RecA Protein as a Motor Protein MM Cox DNA Mismatch Repair: Molecular Mechanisms and Biological Function MJ Schofield, P Hsieh Bacterial Biofilms: An Emerging Link to Disease Pathogenesis VIR Parsek, PK Singh \naerobic Microbial Dehalogenation H Smidt, WM de Vos Signaling in Myxobacteria D Kaiser Anaerobic Oxidation of Methane and Ammonium VI Strous. MSM Jetten Selection for Gene Clustering by Tandem Duplication \B Reams, EL Neidle Viral Error Catastrophe by Mutagenic Nucleosides JP Anderson, R Daituku, LA Loeb Che | cology and Genetics of Microbial Diversity R K issen, PB R ney Ribosomal Crystallography: Initiation, Peptide Bond Formation, and Amino Acid Polymerization are Hampered by Antibiotics \ Yonath, A Bashan Herpes Vector-Mediated Gene Transfer in [reatment of Diseases of the Nervous System JC Glorioso, DJ Fink Che Small RNA Regulators of Escherichia coli: Roles and Mechanisms S Gottesma Recent Advances in the Characterization of Ambient pH Regulation of Gene Expression in Filamentous Fungi and Yeasts MA Penalva HN ArstJ r Biosynthesis of Nonribosomal Peptides R Finking, MA Marahiel Circadian Rhythms in Microorganisms: New Complexities PL Lakin-Thomas, -489_-519 S Brody Biophysical Analyses of Designed and Selected Viutants of Protocatechuate 3 ,4-Dioxygenase CK Brown, MW Vetting CA Earhart, DH Ohlendort Bacterial Iron Sources: From Siderophores to Hemophores C Wandersman, P De le pe laire Interplay Between DNA Replication and Recombination in Prokaryotes KN Kreuze1 Diversity and Evolution of Protein Translocation Vl Pohlschréder, FE Hartmann, NJ Hand, K Dilks, \ Haddad Cellular Functions, Mechanism of Action, and Regulation of FtsH Protease K Ito, Y Akiyama Mating in Candida albicans and the Search for a Sexual Cycle \D Johnson, RJ Bennett Genome-Wide Responses to DNA-Damaging \gents RC Fry, TJ Begley, LD Samson Chapter Titles lhe Res Phosphorelay: A Complex Signal [ransduction System N Majdalani, S Gottesman [ranslational Regulation of GCN4 and the General Amino Acid Control of Yeast \G Hinnebusch Regulation of Bacterial Gene Expression by Riboswitches WC Winkler, RR Breaker ( )pportunities for Genetic Inv estigation Afforded by 1cinetobacter baylyi, \ Nutritionally Versatile Bacterial Species that is Highly Competent for Natural [ranstormation DM Young, D Parke, LN Ornston Curli Biogenesis and Function \iM Barnhart, MR Chapman Manganese Transport and the Role of Manganese in Virulence KM Papp-Wallace, ME Maguire Environmental Stress and Lesion-Bypass DNA Polymerases . Nohmi Structure and Function of RNA Replication J Ortin, F Parra Streamlining and Simplification of Microbial Genome Architecture M Lynch DnaA: Controlling the Initiation of Bacterial DNA Replication and More JM Kaguni Che Bacterial Twin-Arginine Translocation Pathway PA Lee, D Tullman-Ercek, G Georgiou Surtace Proteins of Gram-Positive Bacteria and How They Get There JR Scott, TC Barnett Induction of Competence Regulons as a General Response to Stress in Gram-Positive Bacteria J-P Claverys, \i Prudhomme, B Martin Origin of Mutations Under Selection: The \daptive Mutation Controversy JR Roth, E Kugelberg, AB Reams, E Kofoid, DI Andersson Understanding Microbial Metabolism DM Downs Immunology Kaposi's Sarcoma—Associated Herpesvirus Immunoevasion and Tumorigenesis: Two Sides of the Same Coin? PS Moore, Y Chang 57:609-39 Cell-Mediated Immunity and the Outcome of Hepatitis C Virus Infection NH Shoukry, 58:391-424 AG Cawthon, C Walker Francisella tularensis: Taxonomy, Genetics, and Immunopathogenesis of a Potential Agent of Biowarfare MK McLendon, 60:167-85 MA Apicella, L-AH Allen Morphology, Ultrastructure, and Differentiation Functions of Pseudomonas Porins in Uptake and Efflux REW Hancock, FSL Brinkman Biofilms as Complex Differentiated Communities P Stoodley, K Sauer, DG Davies, JW Costerton ‘Type IV Pili and Twitching Motility JS Mattick How Bacteria Assemble Flagella RM Macnab \ssembly Dynamics of the Bacterial Cell Division Protein FtsZ: Poised at the Edge of Stability L Romberg, PA Levin Spatial and Temporal Control of Differentiation and Cell Cycle Progression in Caulobacter crescentus N Ausmees, C Jacobs Wagener Bacterial Motility on a Surface: Many Ways to a Common Goal RM Harshey Multiple Sigma Subunits and the Partitioning of Bacterial Transcription Space ['M Gruber, CA Gross Intracellular Compartmentation in Planctomycetes JA Fuerst Biogenesis of Inner Membrane Proteins in Escherichia coli J Luirink, G von Heijne, E Houben, J de Gier Biogenesis, Architecture, and Function of Bacterial ‘Type IV Secretion Systems PJ Christie, K Atmakuri, V Krishnamoorthy, S Jakubowski, E Cascales The Structural and Functional Role of RNA in Icosahedral Virus Assembly \ Schneemann 60:5 1-67 Curli Biogenesis and Function MM Barnhart, 60:13 1-47 MR Chapman Defining Virulence Genes in the Dimorphic Fungi CA Rappleye, 60:281-303 WE Goldman Surface Proteins of Gram-Positive Bacteria and How They Get There JR Scott, 60:397—-423 TC Barnett Chapter Titles