Annual Review of Microbiology 2001: Vol 55 Index

33 Pages·2001·6.3 MB·English

SUBJECT INDEX
A fatty acid antibiotics and, Aeropyrum pernix
Aa-Pri2 gene 306 horizontal gene transfer in
hydrophobins and, 626-27 Actinomycetes prokaryotes and, 716,
ABH genes novel thiols and, 333, 347 720, 728
hydrophobins and, 626-27, symbiosis and Agaricus bisporus
631, 638-39 fungus-growing ants, hydrophobins and, 626-27,
A-B type toxins 357-75 631, 635, 638-39
anthrax and, 647 Actinoplanes philippinensis aglU gene
acc genes novel thiols and, 347 bacterial gliding motility
fatty acid antibiotics and, Adaptation and, 57
308-9, 311 fungal pathogenesis and, AgrC/AgrA virulence system
AcCys-GlcNa(1->1)Ins 743, 754-55 quorum sensing and,
novel thiols and, 333, horizontal gene transfer in 181-82
345 prokaryotes and, 709 Agrobacterium tumefaciens
Acetyl-CoA carboxylase Adaptive clones quorum sensing and, 167,
fatty acid antibiotics and, recombination and 171-74, 176-77
310-11 bacterial populatiorr Agrocybe aegerita
Achromatium oxaliferum structure, 561, 563-65, hydrophobins and, 626—27
ammonia-oxidizing 570 ahpC gene
bacteria and, 516 Adaptive immune response fatty acid antibiotics and,
big bacteria and, 116-19 immune checkpoints in 320
acp genes viral latency and, 532, thiol-redox pathways and,
anthrax and, 650 540-41 38-39
fatty acid antibiotics and, Adenylate cyclase Al-2 synthases
308-9, 316 anthrax and, 647 quorum sensing and,
Acquired immunity Advective flow 185-86
immune checkpoints in big bacteria and, 105 ainS gene
viral latency and, 531-32 Adventurous gliding quorum sensing and,
acrAB-encoded multidrug bacterial gliding motility 185
efflux pump and, 49, 54, 57-58 Air-exposed fungal surfaces
fatty acid antibiotics and, Aerial growth coating
319 hydrophobins and, 625, hydrophobins and,
Acromyrmex spp. 630-31, 634 634-35
symbiosis and Aerobacter aerogenes Alcaligenes eutrophus
fungus-growing ants, 359, coliform group periplasmic stress and
362, 364, 367, 372, 374 bacteriology and, 204 extracytoplasmic function
Actinobacillus Aeromonas spp. sigma factors, 596
actinomycetecomitans coliform group alg genes
fatty acid antibiotics and, bacteriology and, 210, bacterial gliding motility
322 212 and, 53
Actinomyces spp. quorum sensing and, 174 periplasmic stress and
773
774 SUBJECT INDEX
extracytoplasmic function terrestrial environments, miscellaneous markers
sigma factors, 601-3 499-502 within rRNA operon,
Allomyces arbuscula DNA chip technology, 507
history of research, 6-7 511-12 primer and probe
ALS gene family Escherichia coli, 516 development, 509-10
fungal pathogenesis and, economic importance, tracking populations
747 489-90 enrichments vs direct
Alternative energy sources functional genomics, extraction results,
nonreplicating latency of 511-12 508-9
Mycobacterium future advances in laboratory experiments,
tuberculosis and, 139, molecular techniques, 509
149-51 509-13 quantitative techniques
Aminoacyl-tRNA synthetases future perspectives, 511-16 targeting amoA and
horizontal gene transfer in x-subclass, 513 16S rDNA, 507-8
prokaryotes and, 709, genome sequencing, utilization, 489-90
729, 732-33, 735 511-12 Ammonium bicarbonate
Ammonia-oxidizing bacteria global nitrogen cycle, biological weapons and,
amoA and other 488-89 244
protein-encoding genes, heterotrophic nitrifiers, amoA gene
510-11 513-14 ammonia-oxidizing
Annamox bacteria, 514 improvements of existing bacteria and, 505-8,
applications, 514-15 technologies, 509-10 510-13
bioremediation of indicator organisms, Amphipathic film
pollutants, 515 515-16 hydrophobins and, 625
biotechnology, 514-15 introduction, 486-92 Amphotericin B
chemolitho-autotrophic isolation of fungal pathogenesis and,
ammonia oxidation, ammonia-oxidizing 752
486-87 bacteria from Ampicillin
conclusions, 516 environment, 491-92 bacteriophage therapy and,
diversity and distribution limitations, 512 447
based on 16S rDNA linking identification with Amplified fragment length
analyses activity, 511 polymorphisms (AFLPs)
aquatic environments, miscellaneous nitrifiers, anthrax and, 663
502-3 513-14 Amplified ribosomal DNA
biofilms, 497-99 modeling, 514-15 restriction analysis
biofilters, 497-99 necessity to combine (ARDRA)
bioreactors, 497-99 methods, 512 ammonia-oxidizing
characterization, nitrification-associated bacteria and, 502
497-505 problems, 490-91 Amycolatopsis methanolica
marine environments, nitrite-oxidizing bacteria, novel thiols and, 344
503-4 513 Anabaena variabilis
phylogenetically-based non-16S PCR techniques bacterial gliding motility
primers and probes, for strain identification and, 61
493-97 amoA gene as marker, Anacystis nidulans
phylogeny of culture 505-6 thiol-redox pathways and,
collection, 492-93 amo-like sequences, 25
sewage, 497-99 506-7 Ancestral DNA
SUBJECT INDEX 775
recombination and antigenic variation at red fatty acid antibiotics and,
bacterial population cell surface in malaria 309
structure, 567 and, 679-80, 683, 685, horizontal gene transfer in
Anergy 696 prokaryotes and, 711,
toxic shock syndrome and, bacteriophage therapy and, 716, 719-21, 723, 726-28
93 444 Archaea
Annamox bacteria fungal pathogenesis and, ammonia-oxidizing
ammonia-oxidizing 760 bacteria and, 494, 516
bacteria and, 494, 514 Antigenic variation big bacteria and, 115
Anomalous nucleotide infected red cell surface in horizontal gene transfer in
composition malaria and, 673—97 prokaryotes and, 709-36
horizontal gene transfer in Antioxidants Archaebacteria
prokaryotes and, 717 novel thiols and, 333, 343, aerobic phototrophic
Anoxia 348 novel thiols and, 333,
big bacteria and, 113, “Antisenescent” red cell 337, 348
127-29 antibody Archaeoglobus fulgidus
Anthrax antigenic variation at red horizontal gene transfer in
Bacillus anthracis and, cell surface in malaria prokaryotes and, 716,
647-63 and, 696 720, 726-28
Antibacterial agents Ants Arsenophonus spp.
bacteriophage therapy and, fungus-growing coliform group
437-48 symbiosis and, 357—75 bacteriology and, 206,
fatty acid antibiotics and, Apical membrane 209
305-25 polarized epithelium and Ascobolus immersus
Antibiotics pathogens, 407, 409, homology-dependent gene
bacteriophage therapy and, 413-17, 425 silencing in fungi and,
437, 440-41, 445-47 Apoptosis 382, 384-86, 389
dairy bacteria phages and, immune checkpoints in asg genes
290 viral latency and, 539-40 quorum sensing and, 187
fatty acids and, 305-25 toxic shock syndrome and, Aspergillus fumigatus
fungal pathogenesis and, 93 biological weapons and,
752 viruses and interferons, 238
nonreplicating latency of 269, 274 fungal pathogenesis and,
Mycobacterium horizontal gene transfer in 744, 748, 751, 753-54,
tuberculosis and, 144 prokaryotes and, 730 758-62
novel thiols and, 345, 348 aprA gene hydrophobins and, 626-27,
quorum sensing and, 165, quorum sensing and, 634
170, 172-73 169 Aspergillus spp.
recombination and Apterostigma spp fungal pathogenesis and,
bacterial population symbiosis and 744, 746, 751
structure, 577, 584 fungus-growing ants, 359, hydrophobins and, 626-27,
symbiosis and 361, 370, 372-73 634
fungus-growing ants, 357, Aquatic environments Assortative recombination
364-66, 371-74 ammonia-oxidizing recombination and
toxic shock syndrome and, bacteria and, 502-3 bacterial population
84, 86, 90 hydrophobins and, 630-34 structure, 565-66
Antibodies Aquifex spp. ATP/ADP translocases
776 SUBJECT INDEX
horizontal gene transfer in toxins, 654 “Background” population
prokaryotes and, 709, 736 cellular model of action, recombination and
Atta spp. 656 bacterial population
symbiosis and edema factor, 657 structure, 572-73
fungus-growing ants, 359, functional organization, Bacterial gliding motility
362, 365-67, 369-70 655-57 adventurous gliding, 57-58
att genes lethal factor, 657 cell division, 66
dairy bacteria phages and, mode of action, 655-57 cell-surface
291-92 pathogenesis, 657-58 polysaccharides, 66
toxic shock syndrome and, regulatory pathways conclusions, 68-69
88-90 ? major virulence factor control of cell movement,
Attine ants regulation of synthesis, 58-59
symbiosis and 658-59 cyanobacteria, 60-62
fungus-growing ants, 359, miscellaneous regulated Cytophaga-Flavobacterium
362-75 components, 660 group, 62-66
Autoinducers o® factor, 660 filamentous cyanobacteria,
quorum sensing and, S-layer regulation, 60-62
165-89 659-60 Flavobacterium
Avian typhosis vaccines, 661 johnsoniae, 64-66
bacteriophage therapy and, virulence plasmids, 650-51 introduction, 50-52
439 Bacillus cereus group motile-nonspreading
Azoles Bacillus anthracis and, mutants, 66
fungal pathogenesis and, 647-63 multiple systems for cell
752 Bacillus spp. movement, 54, 56-59
horizontal gene transfer in Mycoplasma spp., 67-68
B prokaryotes and, 716, myxobacteria, 54
Babesia bovis 720-21, 726-28 polysaccharides, 60-62
antigenic variation at red novel thiols and, 347-48 prospects, 68-69
cell surface in malaria Bacillus subtilis social gliding, 55-57
and, 695 anthrax and, 659-60 Synechocystis PCC6803,
Bacillus anthracis dairy bacteria phages and, 60
biological weapons and, 288, 294, 296 twitching motility, 52-54,
236-39, 247-48 fatty acid antibiotics and, 56-59
conclusions, 663 308-9, 323-24 type IV pili, 52-54, 60-62
detection, 662 horizontal gene transfer in Bacterial mats
disease, 649 prokaryotes and, 716, big bacteria and, 105-6,
early steps of infection, 649 719-22, 726-28 116-17, 119-31
ecology, 662 periplasmic stress and Bacteriology
introduction, 648 extracytoplasmic function coliform group and,
life cycle, 648 sigma factors, 596, 201-24
organism, 649-51 602-4, 614 history of research, 12
phylogeny, 662 quorum sensing and, Bacteriophage therapy
prophylaxis, 661-63 179-82, 186, 188 aims, 437-38
surface structures thiol-redox pathways and, background, 437-38
capsule, 651-52 25, 34 early trials, 438-41
exosporium, 651 Bacillus thuringiensis immunogenicity, 444-45
S-layer, 652-54 anthrax and, 662 polyvalency, 441-44
SUBJECT INDEX 777
problems, 441-45 overview, 115-19 ammonia-oxidizing
questions, 441-45 scale of living organisms, bacteria and, 497-99
recent results, 445-48 106-7 Bioremediation
resistance, 445 sediment-water interface, ammonia-oxidizing
restriction/modification, 444 112-15 bacteria and, 515
Bacteroides spp. size limit of prokaryotes, Biotechnology
coliform group 107-11 ammonia-oxidizing
bacteriology and, 211-12 summary, 131-32 bacteria and, 514—15
Basolateral membrane Binary fission Gairy bacteria phages and,
polarized epithelium and recombination and 296
pathogens, 407-13, 419, bacterial population birA gene
421-25 structure, 561 fatty acid antibiotics and,
“Bastions of polymorphism” Biochemistry 309
recombination and bacterial gliding motility Blastomyces dermatitidis
bacterial population and, 49 fungal pathogenesis and,
structure, 567 nonreplicating latency of 746, 748, 751
B-domain Mycobacterium Bordetella pertussis
anthrax and, 647 tuberculosis and, 145-46 anthrax and, 657
Beauveria bassiana toxic shock syndrome and, Borrelia burgdorferi
hydrophobins and, 636 77 horizontal gene transfer in
Beggiatoa sp. Biofertilizers prokaryotes and, 716,
big bacteria and, 106, ammonia-oxidizing 719, 723, 726-28
115-17, 119-31 bacteria and, 504 quorum sensing and, 186
Beta-propiolactone Biofilms Borrelia spp.
biological weapons and, ammonia-oxidizing antigenic variation at red
244 bacteria and, 497-99 cell surface in malaria
Bifidebacterium spp. quorum sensing and, 165, and, 673, 678, 695
coliform group 170-71 Bovine hemorrhagic
bacteriology and, 211-12 Biofilters septicemia
Big bacteria ammonia-oxidizing bacteriophage therapy and,
anoxia, 127—29 bacteria and, 497-99 439, 445
chemotaxis, 111-13 Biological weapons Bradyrhizobium japonicum
diffusion, 107-11 decontamination, 243-45 thiol-redox pathways and,
diffusive boundary layer, history, 237-40 36
124-27 incident response, 245-49 Brassica napus
ecological niches, 119-30 introduction, 236-37 fatty acid antibiotics and,
electron acceptor, 130-31 levels of protection, 318-19
fast swimmers, 123-24 246-47 Brownian motion
flowing water, 119-21 personal protection, big bacteria and, 107-8,
monopolizing substrates, 241-43 111-12
128, 130 properties, 240-43 Brucella suis
nitrate, 127-29 Bioluminescence biological weapons and,
one-dimensional opposed quorum sensing and, 238
diffusion gradients, 167-68 Buchnera sp.
121-23 Biomass horizontal gene transfer in
organized communities, big bacteria and, 105-32 prokaryotes and, 720, 722
123-24 Bioreactors Budvicia spp.
778 SUBJECT INDEX
coliform group extracytoplasmic function biological weapons and,
bacteriology and, 206, sigma factors, 602, 606-8 248
209, 216, 219, 221 cbpA gene toxic shock syndrome and,
Burkholderia spp. polarized epithelium and 79, 83
biological weapons and, pathogens, 414 Cerulenin
237 ccmG gene fatty acid antibiotics and,
quorum sensing and, thiol-redox pathways and, 305-6, 313-14
174 36 CFTH1 gene
BURST algorithm Cedacea spp. hydrophobins and, 626-27,
recombination and coliform group 629
bacterial population bacteriology and, 206, cgiB gene
structure, 576-78 209 bacterial gliding motility
Buttiauxella spp. CEK]1 gene and, 57-58
coliform group fungal pathogenesis and, Chaperones
bacteriology and, 206, 752 periplasmic stress and
209, 215-19, 221 Cell division extracytoplasmic function
bacterial gliding motility sigma factors, 594-95
C and, 66 che genes
c2-like genus Cell growth bacterial gliding motility
dairy bacteria phages and, viruses and interferons, and, 57-59
283, 285, 295 273-74 Chemokines
Ca*+ Cell inclusions immune checkpoints in
fungal pathogenesis and, big bacteria and, 105 viral latency and, 538-39
755 Cell polarity Chemolitho-autotrophic
Caenorhabditis elegans pathogenesis and, 407-25 bacteria
horizontal gene transfer in Cell size ammonia-oxidizing,
prokaryotes and, 716, prokaryote big bacteria 485-517
726-28 and, 105-32 Chemotaxis
Caephalosporium caerulens Cell wall big bacteria and, 105,
fatty acid antibiotics and, dairy bacteria phages and, 111-13
313 296 Chlamydia spp.
Campylobacter jejuni hydrophobins and, 625, antigenic variation at red
horizontal gene transfer in 637-38 cell surface in malaria
prokaryotes and, 716, periplasmic stress and and, 695
720, 726-28 extracytoplasmic function homology-dependent gene
quorum sensing and, 186 sigma factors, 591-617 silencing in fungi and,
Candida albicans Cell-mediated immunity 398
fungal pathogenesis and, fungal pathogenesis and, horizontal gene transfer in
744-50, 752-58, 761-62 759-61 prokaryotes and, 709,
Candida spp. nonreplicating latency of 716, 719, 725-28, 736
fungal pathogenesis and, Mycobacterium polarized epithelium and
744, 747, 750-51, 754, tuberculosis and, 143 pathogens, 417-19
757-58 Cell-population density Chlamydophyla spp.
capBCA system quorum sensing and, horizontal gene transfer in
anthrax and, 650, 652 165-89 prokaryotes and, 719-20,
car genes Centers for Disease Control 722, 724, 726-27
periplasmic stress and (CDC) Chloramphenicol
SUBJECT INDEX 779
bacteriophage therapy and, recombination and the bacterial species,
447 bacterial population 205-10
Chlorine dioxide structure, 565, 570-71, colonizers, 214-15
biological weapons and, 577, 583-85 conclusions, 223-24
244 Clones Escherichia coli, 220
Chlorochromatium spp. antigenic variation at red enteropathogenic group,
big bacteria and, 119 cell surface in malaria 213-14
Chloroflexus aurantiacus and, 673-97 environmental group,
bacterial gliding motility recombination and 221
and, 68 bacterial population fecal, 211-13, 219-21
Cholera structure, 561, 563-65, fish, 218-19
bacteriophage therapy and, 567-73, 575-80, 583-85 from species to habitat,
440, 446 Clostridium botulinum 210-11
Chromatium spp. biological weapons and, insects, 218-19
big bacteria and, 119 236, 244 intestinal, 211-13
novel thiols and, 336 Clostridium spp. introduction, 202-3
Chromobacterium violaceum anthrax and, 651 markers, 221-23
quorum sensing and, 174 coliform group molluscs, 218-19
Chromosomes bacteriology and, 211-12, opportunistic pathogens,
bacteriophage therapy and, 224 214-15
445 fatty acid antibiotics and, plants, 217-18
cl gene 309, 323 psychrotrophic group,
dairy bacteria phages and, novel thiols and, 347 215-17
290 quorum sensing and, 186 rodents, 218-19
Citrobacter spp. Clusters of orthologous traditional classification,
coliform group groups (COGs) 203-5
bacteriology and, 203, horizontal gene transfer in ubiquitous group,
205-8, 210, 212-13, prokaryotes and, 714-16 220-21
216-17, 220-23 Coccidioides immitis Colonizers
Cladistics fungal pathogenesis and, coliform group
horizontal gene transfer in 74446, 751, 757 bacteriology and, 214-15
prokaryotes and, 718 hydrophobins and, 635 com genes
symbiosis and Coenzymes B and M novel thiols and, 342
fungus-growing ants, 365 novel thiols and, 333, quorum sensing and,
Cladosporium spp. 337-42 179-81
fungal pathogenesis and, Coevolution Commensals
755 symbiosis and fungal pathogenesis and,
hydrophobins and, 626-27, fungus-growing ants, 357, 756
638-39 361-62 recombination and
CLAGY gene COH genes bacterial population
antigenic variation at red hydrophobins and, 626-27, structure, 572
cell surface in malaria 639 Communication circuits
and, 685 Cold-sensitive mutants quorum sensing and,
Claviceps fusiformis history of research, 12-14 165-89
hydrophobins and, 626-27, Coliform group Commuting
629-30 water safety and big bacteria and, 128, 130
Clonal complexes changing designation of Comparative genomics
780 SUBJECT INDEX
dairy bacteria phages and, Cross-reactivity and, 673, 681, 683-89,
285-89 immunological 697
ComP/ComA competence antigenic variation at red Cytochromes
sporulation system cell surface in malaria thiol-redox pathways and,
quorum sensing and, and, 673, 680 33-34
179-82 Cry gene Cytokines
Competence hydrophobins and, 626-27 immune checkpoints in
quorum sensing and, 165, Cryphonectria parasitica viral latency and, 538-39
179-82 hydrophobins and, 626-27, toxic shock syndrome and,
Competitive advantage 629, 634 77, 85, 94
big bacteria and, 105 Cryptococcus neoformans viruses and interferons,
symbiosis and fungal pathogenesis and, 255-75
fungus-growing ants, 364 744-46, 749, 754-56, Cytomegalovirus (CMV)
Complementation studies 760-61 immune checkpoints in
hydrophobins and, 625 csaAB operon viral latency and, 545-46
Conjugation anthrax and, 654 Cytophaga-Flavobacterium
quorum sensing and, 165 CTO primers group
Consensus model of latency ammonia-oxidizing bacterial gliding motility
immune checkpoints in bacteria and, 496 and, 49-50, 62-66
viral latency and, 548-49 Cu gene Cytophaga hutchinsonii
Coprinus cinereus hydrophobins and, 626-27, bacterial gliding motility
hydrophobins and, 626-27, 629, 631, 635-37, 639 and, 68
639 cya gene Cytoplasm
Corynebacterium spp. anthrax and, 650, 654 big bacteria and, 105
fatty acid antibiotics and, Cyanobacteria periplasmic stress and
307 bacterial gliding motility extracytoplasmic function
novel thiols and, 347 and, 49, 60-62 sigma factors, 592-93
cos-site phages big bacteria and, 116 thiol-redox pathways and,
dairy bacteria phages and, Cyclogeny 21, 23-30, 37-39
283, 285-89, 293-95 bacteriophage therapy and,
Cosuppression 442 D
homology-dependent gene Cyclosporin Dairy bacteria phages
silencing in fungi and, periplasmic stress and comparative genomics,
391-92 extracytoplasmic function 285-89
Coxiella burnetii sigma factors, 595 DNA packaging, 293-94
biological weapons and, Cyphomyrmex spp. genetic switch, 290
236, 238 symbiosis and head proteins, 294-95
CPH1 gene fungus-growing ants, 359 integration/excision,
fungal pathogenesis and, Cystic fibrosis 291-92
752 quorum sensing and, introduction, 284
cpx genes 170-71 introns, 290-91
periplasmic stress and Cys-X-X-Cys sequence motif Lactobacillus phages,
extracytoplasmic function thiol-redox pathways and, 288-89
sigma factors, 591-617 21-22, 25, 32 Lactococcus phages,
cro gene Cytoadherence 285-87
dairy bacteria phages and, antigenic variation at red lysis cassette, 295-96
290 cell surface in malaria outlook, 296-97
SUBJECT INDEX 781
replication, 292-93 Diazoborine prokaryotes and, 714—15
Streptococcus phages, fatty acid antibiotics and, Dormancy
287-88 305-6, 319-22 nonreplicating latency of
tail proteins, 294-95 Differential induction Mycobacterium
transcription, 289-90 viruses and interferons, tuberculosis and, 139-56
“Death by exhaustion” 260-61 Double-stranded RNA
concept Diffusion (dsRNA)
nonreplicating latency of big bacteria and, 105, viruses and interferons,
Mycobacterium 107-11, 121-23 255-58, 263-64, 275
tuberculosis and, 156 Diffusive boundary layer Drinking water
Decontamination big bacteria and, 105, coliform group
biological weapons and, 114-15, 124-27 bacteriology and, 201-24
235, 243-45 dif genes Drosophila melanogaster
degP gene bacterial gliding motility horizontal gene transfer in
periplasmic stress and and, 57, 59 prokaryotes and, 716,
extracytoplasmic function Direct extraction 726-28
sigma factors, 592, ammonia-oxidizing “Drug indifference”
594-96, 599, 602, 607-8, bacteria and, 508-9 nonreplicating latency of
611, 613-15 Dispersal Mycobacterium
Deinococcus radiodurans biological weapons and, tuberculosis and,
horizontal gene transfer in 235 140
prokaryotes and, 716, Dissemination factors Drug-resistant pathogenic
720, 723, 726-28, 732, fungal pathogenesis and, bacteria
735 748 fatty acid antibiotics and,
Delisea pulchra Disulfide bonds 305-25
quorum sensing and, 188 thiol-redox pathways and, dsb genes
Denaturing gradient gel 21-40 periplasmic stress and
electrophoresis (DGGE) Diversity extracytoplasmic function
ammonia-oxidizing ammonia-oxidizing sigma factors, 594
bacteria and, 496, 505, bacteria and, 485, thiol-redox pathways and,
509-10 492-505 31-36
Denitrification DNA chip technology Duffy binding-like
history of research, 15—16 ammonia-oxidizing superfamily
dep gene bacteria and, 511-12 antigenic variation at red
anthrax and, 650 DNA degradation cell surface in malaria
Desulfonema spp. homology-dependent gene and, 687, 689
big bacteria and, 130 silencing in fungi and, Dysentery
Desulfovibrio sp. 381-82, 384-90, 397 bacteriophage therapy and,
ammonia-oxidizing DNA-DNA hybridization 437-39
bacteria and, 510 coliform group
Development bacteriology and, 201, E
hydrophobins and, 625-40 205, 214 eag gene
dewA gene DNA packaging anthrax and, 653, 660
hydrophobins and, 626-27 dairy bacteria phages and, eas gene
d’Herelle F 283, 287, 293-94 hydrophobins and, 626—27
bacteriophage therapy and, DNA polymerase II Ecology
437-39, 441-46 horizontal gene transfer in ammonia-oxidizing
782 SUBJECT INDEX
bacteria and, 485-517 novel thiols and, 335 coliform group
anthrax and, 662 Enteric origins bacteriology and, 206-8,
antigenic variation at red coliform group 211, 215, 217-19, 221
cell surface in malaria bacteriology and, 201, quorum sensing and, 167,
and, 676 211-13 172-74, 188
big bacteria and, 119-30 Enterobacter spp. Erythrocytes
coliform group coliform group antigenic variation at red
bacteriology and, 201-24 bacteriology and, 201, cell surface in malaria
recombination and 203-8, 210, 212-23 and, 673-97
bacterial population quorum sensing and, 174 Erythromycin
structure, 562 Enterococcus spp. novel thiols and, 345
Economic factors coliform group Escherichia coli
biological weapons and, bacteriology and, 211-12, ammonia-oxidizing
235 224 bacteria and, 516
dairy bacteria phages and, quorum sensing and, 166, anthrax and, 652
283-97 186 bacterial gliding motility
Edema factor Envelope stress and, 52, 58
anthrax and, 657 periplasmic stress and bacteriophage therapy and,
Edwardsiella spp. extracytoplasmic function 44447
coliform group sigma factors, 591-617 big bacteria and, 111, 117
bacteriology and, 206 Environmental factors biological weapons and,
EFGI gene coliform group 247
fungal pathogenesis and, bacteriology and, 201, coliform group
752 221 bacteriology and, 201-24
Electron acceptor Epigenetics dairy bacteria phages and,
big bacteria and, 105, homology-dependent gene 292
130-31 silencing in fungi and, fatty acid antibiotics and,
Electron transfer 382-98 307-13, 315-16, 318-24
novel thiols and, 340 Epizootic infections history of research, 8, 11,
thiol-redox pathways and, bacteriophage therapy and, 15
21, 23-24, 27, 32-37 437-48 horizontal gene transfer in
Elicitors Epoxythane prokaryotes and, 710-11,
hydrophobins and, 625, biological weapons and, 714-16, 719-22, 726-28
637 244 nonreplicating latency of
quorum sensing and, 165 EPR gene Mycobacterium
Endogenous infection routes fungal pathogenesis and, tuberculosis and, 153
fungal pathogenesis and, 749 novel thiols and, 336-37,
758 Epstein-Barr virus (EBV) 342, 347
Enology immune checkpoints in periplasmic stress and
history of research, 9-12 viral latency and, 546—47 extracytoplasmic function
Enoyl-ACP reductase Epulopiscium fischeloni sigma factors, 591-617
fatty acid antibiotics and, big bacteria and, 105-6, polarized epithelium and
318-22 108, 110, 115-18, 131 pathogens, 411, 414-15
Enrichments Ergothioneine quorum sensing and, 174,
ammonia-oxidizing novel thiols and, 333, 183, 186
bacteria and, 508-9 346-49 recombination and
Entamoeba histolytica Erwinia spp. bacterial population