Agricultural Proteomics Volume 2: Environmental Stresses PDF
Preview Agricultural Proteomics Volume 2: Environmental Stresses
Ghasem Hosseini Salekdeh E ditor Agricultural Proteomics Volume 2 Environmental Stresses Agricultural Proteomics Volume 2 Ghasem Hosseini Salekdeh Editor Agricultural Proteomics Volume 2 Environmental Stresses 123 Editor Ghasem Hosseini Salekdeh Department ofSystems Biology Agricultural Biotechnology Research Institute of Iran Karaj Iran ISBN978-3-319-43276-2 ISBN978-3-319-43278-6 (eBook) DOI 10.1007/978-3-319-43278-6 LibraryofCongressControlNumber:2016946323 ©SpringerInternationalPublishingSwitzerland2016 Thisworkissubjecttocopyright.AllrightsarereservedbythePublisher,whetherthewholeorpart of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission orinformationstorageandretrieval,electronicadaptation,computersoftware,orbysimilarordissimilar methodologynowknownorhereafterdeveloped. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publicationdoesnotimply,evenintheabsenceofaspecificstatement,thatsuchnamesareexemptfrom therelevantprotectivelawsandregulationsandthereforefreeforgeneraluse. The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authorsortheeditorsgiveawarranty,expressorimplied,withrespecttothematerialcontainedhereinor foranyerrorsoromissionsthatmayhavebeenmade. Printedonacid-freepaper ThisSpringerimprintispublishedbySpringerNature TheregisteredcompanyisSpringerInternationalPublishingAGSwitzerland Preface AccordingtoFAO’sestimate,thenumberofpeoplesufferingfromchronichunger has increased to over a billion. Becausemostoftheextremepoorwhosufferfromhungerliveinruralareas,the effort to enhance agricultural productivity will be a key element to reduce the numbers of the global population suffering hunger. This goal will not be achieved unless we develop new genotypes offood crops and animals that will both improve production under suboptimal conditions. The discoveryofgenotypeswiththecapacitytocopewiththeseproblemssuggeststhat increasing the support of breeding for fragile environments is a viable strategy for upliftingtheruralpoor.However,breedingforenvironmentalstressesisaslowand inefficient process. Although several genotypes with good stress tolerance to environmental stresses have been identified or developed, it is difficult to transfer these traits to elite backgrounds because they are genetically very complex. One possibilitycurrentlybeingevaluatedforenhancementofstresstoleranceistoapply biomarkers in breeding programs to follow the inheritance of major genes that are difficulttophenotype,suchaspyramidsofdiseaseresistancegenesofsimilareffect. Proteomics is a powerful approach to identify proteins associated with stress tol- erance.Itoffersanentrypointforidentifyingpossiblysignificantchangesinprotein levels against a background of unresponsive proteins. The application of proteomics is usually initiated by detection of stress-responsive proteins through the comparison of proteomics data between stressed and control organisms. Identification of these expressional candidate pro- teins may then reveal that some of them have functions clearly consistent with the stresstolerancetrait.Otherrelevantinformationincludingtheexpressionpatternof mRNA and the metabolomics may help to further verify the correlation of these candidate proteins with desirable traits. The step forward from collecting pro- teomics data to functional prediction will pave the way for the sustainable agri- cultural production under unfavorable environmental conditions. Thisbookwillcoverseveraltopicstoelaboratehowproteomicsmaycontribute to our understanding of mechanisms involved in stress adaptation. The knowledge v vi Preface being accumulated through a wide range of proteomics technologies may eventu- allybeutilizedinbreedingprogramstoenhancestresstolerance.Thisbookpresents a comprehensive review about the responses of crop and farm animals to envi- ronmental stresses. Challenges related to stress phenotyping and integration of proteomics and other omics data have also been addressed. Karaj, Iran Ghasem Hosseini Salekdeh Contents 1 Well-Designed Experiments Make Proteomic Studies on Stressed Plants Meaningful. .... .... .... .... .... ..... .... 1 Brian J. Atwell 2 Cereal Root Proteomics for Complementing the Mechanistic Understanding of Plant Abiotic Stress Tolerance .. .... ..... .... 19 Jennylyn L. Trinidad, Herra L. Grajo, Jose B. Abucay, Jr. and Ajay Kohli 3 A Proteomic View of the Cereal and Vegetable Crop Response to Salinity Stress.... .... .... .... .... .... ..... .... 53 Katja Witzel and Hans-Peter Mock 4 Proteomics of Flooding-Stressed Plants.. .... .... .... ..... .... 71 Mudassar Nawaz Khan and Setsuko Komatsu 5 Proteomic Analysis of Crop Plants Under Low Temperature: A Review of Cold Responsive Proteins .. .... .... .... ..... .... 97 Javad Gharechahi, Golandam Sharifi, Setsuko Komatsu and Ghasem Hosseini Salekdeh 6 How Proteomics Contributes to Our Understanding of Drought Tolerance ... ..... .... .... .... .... .... ..... .... 129 Mehdi Mirzaei, Yunqi Wu, Paul Worden, Ante Jerkovic and Brian J. Atwell 7 The Impact of Heat Stress on the Proteome of Crop Species.. .... 155 Andrew P. Scafaro and Owen K. Atkin 8 Proteomics Approach for Identification of Nutrient Deficiency Related Proteins in Crop Plants.... .... .... .... .... ..... .... 177 Mohammad-Zaman Nouri, Mohammad-Reza Ghaffari, Hamid Sobhanian and Mohammad-Reza Hajirezaei vii viii Contents 9 Plant Response to Bacterial Pathogens: A Proteomics View .. .... 203 Sheldon Lawrence II, Jennifer Parker and Sixue Chen 10 Plant Fungus Interaction Proteomics: An Update.. .... ..... .... 227 Kanika Narula, Pooja R. Aggarwal, Niranjan Chakraborty and Subhra Chakraborty 11 Insight into Physiological, Molecular, and Proteomic Changes Associated with Phytoplasma Infection in Crop Plants . ..... .... 251 Javad Gharechahi, Mohsen Mardi and Ghasem Hosseini Salekdeh 12 Insect Pest Proteomics and Its Potential Application in Pest Control Management ... ..... .... .... .... .... .... ..... .... 267 Mehdi Dastranj, Javad Gharechahi and Ghasem Hosseini Salekdeh 13 Proteomic Research on Honeybee Diseases... .... .... ..... .... 289 Yue Hao and Jianke Li 14 Application of Proteomic Biomarkers in Livestock Disease Management .. .... .... ..... .... .... .... .... .... ..... .... 299 Ehsan Oskoueian, Peter David Eckersall, Elena Bencurova and Thomas Dandekar Index .... .... .... .... .... ..... .... .... .... .... .... ..... .... 311 Contributors Jose B. Abucay, Jr., Genetics and Biotechnology Division, Plant Molecular Biology Laboratory, International Rice Research Institute, Metro Manila, Philippines;CollegeofArtsandSciences,UniversityofthePhilippinesLosBaños, Los Baños, Laguna, Philippines PoojaR.Aggarwal NationalInstituteofPlantGenomeResearch,ArunaAsafAli Marg, New Delhi, India Owen K. Atkin ARC Centre of Excellence in Plant Energy Biology, Division of Plant Sciences, Research School of Biology, Australian National University, Canberra, ACT, Australia Brian J. Atwell Department of Biological Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, NSW, Australia Elena Bencurova Department of Bioinformatics, Biocenter, University of Wuerzburg, Würzburg, Germany; Laboratory of Biomedical Microbiology and Immunology, Department of Microbiology and Immunology, University of Veterinary Medicine and Pharmacy in Kosice, Kosice, Slovakia NiranjanChakraborty NationalInstituteofPlantGenomeResearch,ArunaAsaf Ali Marg, New Delhi, India Subhra Chakraborty National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, India Sixue Chen Department of Biology, Plant Molecular and Cellular Biology, Interdisciplinary Center for BiotechnologyResearch, Genetics Institute,University of Florida, Gainesville, FL, USA Thomas Dandekar Department of Bioinformatics, Biocenter, University of Wuerzburg, Würzburg, Germany Mehdi Dastranj Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education, and Extension ix x Contributors Organization, Karaj, Iran; Department of Plant Protection, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran Peter David Eckersall Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK Mohammad-Reza Ghaffari Systems Biology Department, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization (AREEO), Karaj, Iran JavadGharechahi ChemicalInjuriesResearchCenter,BaqiyatallahUniversityof Medical Sciences, Tehran, Iran Herra L. Grajo Genetics and Biotechnology Division, Plant Molecular Biology Laboratory, International Rice Research Institute, Metro Manila, Philippines; CollegeofArtsandSciences,UniversityofthePhilippinesLosBaños,LosBaños, Laguna, Philippines Mohammad-Reza Hajirezaei Department of Physiology and Cell Biology, Molecular Plant Nutrition, Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany Yue Hao Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China Ante Jerkovic Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, Australia Mudassar Nawaz Khan Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Japan Ajay Kohli Genetics and Biotechnology Division, Plant Molecular Biology Laboratory, International Rice Research Institute, Metro Manila, Philippines Setsuko Komatsu Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba, Japan Sheldon Lawrence II Department of Biology, Plant Molecular and Cellular Biology,UniversityofFlorida,Gainesville,FL,USA;GeneticsInstitute,University of Florida, Gainesville, FL, USA Jianke Li Institute of Apicultural Research, Chinese Academy of Agricultural Sciences, Beijing, China Mohsen Mardi Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education, and Extension Organization, Karaj, Iran
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