Advances in Forensic Haemogenetics 5 15th Congress of the International Society for Forensic Haemogenetics (Internationale Gesellschaft fUr forensische Hfunogenetik e. v.) Venezia, 13-15 October 1993 Edited by W. Bar, A.Fiori and U. Rossi Springer-Verlag Berlin Heidelberg New)f}rk London Paris Tokyo Hong Kong Barcelona Budapest Prof. Dr. Walter Bar Institut fur Rechtsmedizin Universitat Zurich-Irchel Winterthurerstrasse 190 CH-8057 Zurich, Switzerland Prof. Dr. Angelo Fiori Istituto di Medicina Legale Universita Cattolica del Sacro Cuore Largo Francesco Vito 1 1-00168 Roma, Italy Prof. Dr. Umberto Rossi Servizio Ematologia e Centro Trasfusionale Ospedale Civile Legnano 1-20025 Legnano (Milano), Italy With 249 Figures ISBN-13 :978-3-540-57643-3 e-ISBN-13 :978-3-642-78782-9 DOl: 10.1007/978-3-642-78782-9 This work is subject to copyright. 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In every individual case the user must check such information by consulting the relevant literature. Typesetting: Camera ready by authorsleditors SPIN 10127715 19/3130 -5 43210· Printed on acid-free paper Preface This volume comprises the Proceedings of the 15th Congress of the International Society of Forensic Haemogenetics (ISFH), held for the first time in Venezia Lido, Italy, on 13th-15th October 1993. The abstracts of the scientific contributions sent to the Congress have been sub divided into chapters with numbers and headings corresponding to the Congress sessions listed in the final programme. A general index of all authors, in alpha betical order, is given at the end of the book. The book consists of 188 contributions and addresses several problems presently being discussed in forensic haemogenetics. The main portion is, of course, devoted to DNA technology: present and future trends in DNA method ology, DNA polymorphisms in paternity testing and in criminal investigation, DNA sequencing, PCR methodology, quality control and quality assurance. Data have been accumulated on population genetics and biostatistics. A new look has been given at old friends, with important contributions on the molecular biology of classical markers. Conventional genetic markers have been studied. Problems connected with genetic typing and human rights have been dealt with in depth, and the history and geography of human genes have been elucidated. As President of the Congress Organizing Committee I am greatly indebted not only to my co-editors Walter Bar (ISFH President) and Angelo Fiori (Congress President), but also to the other members of the ISFH Board and Scientific Committee (Bernd Brinkmann, Bruce Budowle, Patrick Lincoln and Wolfgang Mayr), to Gianalfredo Sciorelli and the Organizing Secretariat of the "SIITS AICT Servizi", and to all other Italian colleagues of the Organizing Committee. All of them helped me in many ways in the preparation of the Congress and in the organization of the submitted scientific material, and I consider all of them co-editors in spirit of the present Proceedings. Umberto Rossi Contents * Preface Opening lecture History and geography of human genes A. Piazza ....................................................... 3 1. Genetic typing and human rights DNA - A human rights profile P. Thornton .................................................... 15 The association of individual sociodemographic factors with paternity test results R. Walker, M. Coffey, and R. Kodali ................................... 23 The expert's evidence and the judge's evaluation of all information in court decisions K. Hummel ..................................................... 26 Ethical considerations about unexpected facts disclosed during genetic association studies N.N.R. Salaru, M.A. v'R. Barros, and S.S. Rubinstein ....................... 32 2. Molecular biology of classical markers Molecular analysis of classical red cell markers D.A. Hopkinson ................................................. 37 The molecular genetics of HLA W.R. Mayr and D. W.M. Schwartz .................................... 45 * The lectures of invited speakers are in boldface, oral communications in normal type, and posters in italics (listed in alphabetical order by first author). VIII A new look at old friends: the molecular biology of the protein markers G.F. Sensabaugh ................................................ 50 The molecular basis of the "red cell" acid phosphatase polymorphism J. Dissing ......................................... '. . . . . . . . . . . .. 57 Human red cell acid phosphatase (ACP 1): genetic typing at the DNA level K.D. Ayer Lazaruk and G.F. Sensabaugh ................................ 65 Molecular analysis of esterase D polymorphism S. Tsuchida. E. Fukui. and S. Ikemoto .................................. 68 3. Quality control and quality assurance Quality assessment as an essential tool for the achievement of total quality J.F.A. Stivala ................................................... 73 Quality control of paternity investigations in Scandinavia B. Lindblom, N. Morling, and B. Teige ................................. 81 Comparison of DNA-profiling and classical blood grouping in criminal cases B. Eriksen, l. Dissing, M. Thymann. and O. Svensmark ..................... 84 Fluorescent based typing of two short tandem repeat loci in a Swedish population sample and reproducibility off ragment size estimates S. Holgersson. l. Karlsson, A. Kihlgren, B. Rosen. and P. Savolainen ........... 87 Restriction fragment length polymorphism: image analysis and molecular weight calculation with a scanner-based computer system C. Luckenbach. A. Luckenbach. A. Grathwohl. and H. Ritter ................. 90 Quality control: interlaboratory comparison of RFLP results O. Svensmark and B. Eriksen ........................................ 93 An optimised chemiluminescent detection system: is it compatible with data generated using 32p and a different ladder? l.A. Thomson and Y.D. Syndercombe Court .............................. 96 4. DNA methodology: present and future trends DNA variation and its analysis by hybridisation to olygonucleotide arrays E.M. Southern ................................................. 103 IX Simultaneous analysis of STR and VNTR polymorphisms A. Lango, A.M. Ekdal, L. Nyberg, and B. Lindblom ....................... 109 Streamlining VNTR analysis. A fast procedure for non isotopic DNA profiling I. Balazs, 1. Neuweiler, K. Kowalski, and 1. Victor ........................ 112 Nonradioactive approach to type DNA by minisatellite variant repeats A. Hinney, C. Luckenbach, C. Durr, S. Rodewyk, R. Poltl, and H. Ritter ........ 115 Minisatellites of the Y chromosome P. Fattorini, F. Florian, M. Vatta, F. Cossutta, F., De Cristini, B.M. Altamura, and G. Graziosi ................................................. 118 Anomalous electrophoretic behaviour of HUMACTBP2 (SE33) M. V. Lareu, c.P. Phillips, C. Pestoni, F. Barros, 1. Munoz, and A. Carracedo .... 121 Evaluation of the tris-glycine!tris-chloride discontinuous buffer system for the electrophoretic analysis of VNTR and STR loci A. Alonso, P. Martin, C. Albarran, and M. Sancho ........................ 124 Multilocus profiles of the Basque country population with dig-labelled probes 33.15 and 33.6 S. Alonso, A. Castro, l. Fernandez-Fernandez, C. Barbero, A. Garda-Orad, P. Arizti, G. Tamayo, and M.M. De Pancorbo 127 Use of chemiluminescent labeled probes for forensic and paternity determinations M. Baird, L. Galbreath, R. Cunningham, 1. Lastella, and l. Balazs 130 Three VNTR and Y-chromosome identification from biological stains L. Caenazzo, C. Crestani, NA. Greggio, E. Ponzano, G. Bonan, and P. Cortivo 133 Application of the capillary DNA chromatography in the paternity testing using APOB amplified alleles F. Capon, G. Novelli, and B. Dallapiccola 136 Automated laser fluorescent analysis of amplified fragment length polymorphisms and short tandem repeats M. Dobosz, VL Pascali, I. Boschi, E. D'Aloja, and A. Fiori ................ 139 Further characterization of the VNTR probe LH1 (D5S11O) and applications for DNA typing A.l. Eisenberg, M. Clement, R.A. Bever, M.E. Gaskill, D.P. Carlson, and L. Klevan 142 x Method for the evaluation of C-bands heteromorphism in human chromosomes by image processing (J.P.) M. Esposito, P. Grammatico, G. Quaremba, C. Pagano, E. Morrone, G. Del Porto, and C. Romano 145 Polymorphism of the DI S80 locus in Basque country population and its forensic application l. Fernandez-Fernandez, A. Castro, S. Alonso, C. Barbero, A. Garda-Orad, P. Arizti, M. Portuondo, G. Tamayo, and M. M. De Pancorbo ............... 148 Studies on sex determination with different Y-specific probes after quantifying human genomic DNA with the slot blot hybridization method H. Haas, W. Hofmann, and G. Weiler ................................. 151 Typing human DNA using capillary electrophoresis: comparison of slab gel and capillary formats M.M. Holland, L.A. Turni, S. Delrio, M. Marino, R.S. Lofts, D.L. Fisher, I. Ross, I. W. Schumm, and P.L. Williams 156 Comparison of DNA-extraction methods from compact bone tissue K. Lalu, P.I. Karhunen, and A. Sajantila ............................... 160 DNA-profiling on carpeting- Methods of purification, restriction and detection I. Lotterle and M. Hantschel ....................................... 164 DNA-extraction for PCR: phenol-chloroform vs. chelex- A comparative study I. Schnee-Griese and S. Linder ...................................... 167 Simple and rapid typing for VNTR polymorphisms using high resolution electrophoresis of PCR products on rehydratable polyacrylamide gels D. w.M. Schwartz, E.M. lungl, O.R. Krenek, and W.R. Mayr ................. 170 DNA typing of coagulation factor XIII "a" subunit by PCR-RFLP and SSCP K. Suzuki, S. Ito, K. Matsui, K. Fujita, T. Miyazaki, H. Matsumoto, and Y. Mizoi 173 Two different mechanisms are involved in the polymorphism shown by the locus D2S44 E. Valverde, C. Cabrero, A. Dfez, M.S. Rodriguez-Calvo, I. Alemany, and A. Carracedo 176 XI 5. DNA polymorphisms in paternity testing Paternity testing by oligonucleotide DNA fingerprinting: a multi-centre study proving reliability and validity I. Bohm, M. Krawczak, P. Niirnberg, J. Hampe, J. Hundrieser, H. Poche, Ch. Peters, R. Slomski, J. Kwiatkowska, M. Nagy, A Popperl, J.T. Epplen, and J. Schmidtke ................................................ 181 Population genetic studies of short tandem repeat loci (STRS): efficiency in paternity testing AP. Pai, T. Jackson, D.J. Pritchard, and S.S. Papiha ...................... 184 Application of a Y -linked tetranucleotide repeat polymorphism to paternity cases E. Trabetti, A. Casartelli, and P.F. Pignatti ............................. 187 Clarification of a paternity case with the mother, two children and the mother of the putative father V. van Huffel, P. Rouger, and W.R. Mayr .............................. 190 Analysis of the locus D1S80: frequency distribution in North-East England and application to paternity testing S.S. Papiha and M. Thymann ....................................... 193 An unusual case of failed vasectomy confirmed by DNA profiling J.A. Thomson, P.J. Lincoln, and Ph. Mortimer ........................... 196 Development and validation of buccal swab collection methods for DNA testing for paternity testing R.A Bever and M.A. De Guglielmo ................................... 199 Application of conventional and DNA polymorphism to paternity cases C. Crestani, L. Caenazzo, E. Ponzano, G. Bonan, and P. Cortivo ............. 202 DNA typing - Strategies in paternity and forensic casework E.D. Du Toit, B. Arendse, S. Reavis, M. Jacobs, T. Schlaphoff, and J. Rousseau ... 204 Parentage control in cattle by genotyping microsatellites M.-L. Glowatzki-Mullis and R. Fries .................................. 207 Paternity testing with DNA systems: application of DIS80 phenotyping to Danish paternity cases analysed with five VNTR single locus systems H.E. Hansen and M. Thymann ...................................... 210 peR polymorphisms compared to other genetic markers in the paternity testing E. Huguet, M. Gene, J. Medallo, C. Sanchez Garda, J. Corbella, and J. Mezquita ................................................. 214 XII Case report of a disputed paternity with no biological sample from the putative father I. Lopez-Abad(a, M.A. Mart(nez, A. Gremo, and J.M. Ruiz De La Cuesta 217 Paternity testing of endangered species of birds by DNA fingerprinting and random amplified polymorphic DNA fingerprinting J. Mathe, C. Eisenmann, L. Konrad, G. Weyland, and A. Seitz 220 Characterization of three microsatellites and their application in paternity testing E. Molteni, F. Laface, S. Sirchia, and G. Colucci ......................... 223 Paternity testing in Italy using minisatellite variant repeat (MVR) G. Novelli, S. La Cicero, I. Torrente, P. Fucci, and B. Dallapiccola 226 PCR-based analysis of HLA-DQa, DIS80 and Apo B loci in paternity testing J. Reinhold and J. Arnold .......................................... 229 Proving paternity using formalin fixed, paraffin embedded tissue samples from a deceased father A. Sajantila and M. Lukka 232 Application of single-locus probes in cases of disputed paternity. The usefulness of the combination of HLA and DNA C. Seidl, U. Rabold, B. Briiggemann, M. Kilp, D. Teixidor, and E. Seifried 235 Expertise report in disputed paternity cases with two or more children A.L. Simoes and N.N.R. Salaru ...................................... 240 6. DNA polymorphisms in criminal investigation RFLP typing: a new highly polymorphic VNTR locus and chemiluminescent detection B. Budowle, L. Klevan, and A.J. Eisenberg ............................ 245 Evaluation of Amp-FLP markers and summary of PeR-based forensic casework M.A. De Guglielmo, J.M. Rader, and R.A. Bever ......................... 253 Investigations on vaginal cell/sperm mixtures from microscopical slides P. Wiegand, M. Madeja, and B. Brinkmann ............................. 256 Dealing with human remains sampled in disaster areas. The case of the Israelian embassy explosion occurred in Buenos Aires D. Corach, G. Penacino, and A. Sotelo ................................ 259