M P –M i olecular lant icrobe nteractions This page intentionally left blank M P – olecular lant M i icrobe nteractions Edited by Kamal Bouarab Département de Biologie Université de Sherbrooke Sherbrooke Québec Canada Normand Brisson Department of Biochemistry Université de Montréal Montréal Québec Canada and Fouad Daayf Department of Plant Science University of Manitoba Winnipeg Manitoba Canada CABI is a trading name of CAB International CABI Head Office CABI North American Office Nosworthy Way 875 Massachusetts Avenue Wallingford 7th Floor Oxon OX10 8DE Cambridge, MA 02139 UK USA Tel: +44 (0)1491 832111 Tel: +1 617 395 4056 Fax: +44 (0)1491 833508 Fax: +1 617 354 6875 E-mail: [email protected] E-mail: [email protected] Website: www.cabi.org © CAB International 2009. All rights reserved. No part of this publication may be reproduced in any form or by any means, electronically, mechanically, by photocopying, recording or otherwise, without the prior permission of the copyright owners. A catalogue record for this book is available from the British Library, London, UK. Library of Congress Cataloging-in-Publication Data Molecular plant-microbe interactions / edited by Kamal Bouarab, Normand Brisson and Fouad Daayf. p. cm. Includes bibliographical references and index. ISBN 978-1-84593-574-0 (alk. paper) 1. Plants--Disease and pest resistance. 2. Plant-microbe relationships. 3. Fungal diseases of plants. 4. Virus diseases of plants. I. Bouarab, Kamal. II. Brisson, Normand, 1955- III. Daayf, Fouad. IV. Title. SB750.M67 2009 632’.3--dc22 2009007330 ISBN-13: 978 1 84593 574 0 Typeset by Columns Design, Reading. Printed and bound in the UK by the MPG Books Group, Bodmin. The paper used for the text pages in this book is FSC certified. The FSC (Forest Stewardship Council) is an international network to promote responsible management of the world’s forests. Contents Contributors vii Preface xi 1 P lant RNA-silencing Immunity and Viral Counter-defence Strategies 1 Santiago Wadsworth and Patrice Dunoyer 2 Mitogen-activated Protein Kinase Cascades in Plant Defence Responses 36 Fengming Song, Huijuan Zhang and Shuqun Zhang 3 Molecular Mechanisms of the Radical Burst in Plant Immunity 59 Hirofumi Yoshioka, Shuta Asai, Noriko Miyagawa, Tatsushi Ichikawa, Miki Yoshioka and Michie Kobayashi 4 Disease Resistance in Arabidopsis, Starring TGA2 and also Featuring NPR1 75 Patrick Boyle, Pierre R. Fobert and Charles Després 5 Disease Resistance Genes: Form and Function 94 Melanie A. Sacco and Peter Moffett 6 Transcription Factor Families Involved in Plant Defence: from Discovery to Structure 142 Jean-Sébastien Parent, Laurent Cappadocia, Alexandre Maréchal, Pierre R. Fobert and Normand Brisson v vi Contents 7 Cross Talk Between Induced Plant Immune Systems 163 Rocío González-Lamothe, Mohamed El Oirdi, Taha Abd El Rahman, Raphaël Sansregret, Hamed Bathily and Kamal Bouarab 8 The Needle and the Damage Done: Type III Effectors and the Plant Immune Response 179 Jennifer D. Lewis, Karl Schreiber and Darrell Desveaux 9 Virulence Determinants and the Global Regulation of Virulence in Xanthomonas campestris 211 Adrián A. Vojnov, J. Maxwell Dow and Kamal Bouarab 10 Suppression of Induced Plant Defence Responses by Fungal and Oomycete Pathogens 231 Abdelbasset El Hadrami, Ismail El Hadrami and Fouad Daayf 11 Sustainable Agriculture and the Multigenomic Model: How Advances in the Genetics of Arbuscular Mycorrhizal Fungi will Change Soil Management Practices 269 Erin Zimmerman, Marc St-Arnaud and Mohamed Hijri 12 Microbial Traits Associated with Actinobacteria Interacting with Plants 288 Anne-Marie Simao-Beaunoir, Sébastien Roy and Carole Beaulieu 13 Insight into Fusarium–Cereal Pathogenesis 319 Rajagopal Subramaniam, Charles G. Nasmith, Linda J. Harris and Thérèse Ouellet Index 337 Contributors Abd El Rahman, Taha, Centre de Recherche en Amélioration Végétale, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada. Asai, Shuta, Laboratory of Defense in Plant–Pathogen Interactions, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan. Bathily, Hamed, Centre de Recherche en Amélioration Végétale, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada. Beaulieu, Carole, Centre SÈVE, Département de biologie, Université de Sherbrooke, Sherbrooke, Québec, J1K 2R1, Canada; carole.beaulieu@ usherbrooke.ca Bouarab, Kamal, Centre de Recherche en Amélioration Végétale, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada; Kamal. [email protected] Boyle, Patrick, Department of Biological Sciences, Brock University, 500 Glenridge Avenue, St Catharines, Ontario, L2S 3A1, Canada. Brisson, Normand, Department of Biochemistry, Université de Montréal, Montréal, Québec, Canada; [email protected] Cappadocia, Laurent, Department of Biochemistry, Université de Montréal, Montréal, Québec, Canada. Daayf, Fouad, Department of Plant Science, University of Manitoba, 222, Agriculture Building, Winnipeg, Manitoba, R3T 2N2, Canada; [email protected] Després, Charles, Department of Biological Sciences, Brock University, 500 Glenridge Avenue, St Catharines, Ontario, L2S 3A1, Canada; [email protected] Desveaux, Darrell, Centre for the Analysis of Genome Evolution and Function & Department of Cell and Systems Biology, University of vii viii Contributors Toronto, 25 Willcocks Street, Toronto, Ontario, M5S 3B2, Canada; [email protected] Dow, J. Maxwell, BIOMERIT Research Centre, Department of Microbiology, National University of Ireland, Cork, Ireland. Dunoyer, Patrice, Institut de Biologie Moléculaire des Plantes, CNRS, 67084 Strasbourg Cedex, France; [email protected] strasbg.fr El Hadrami, Abdelbasset, Department of Plant Science, University of Manitoba, 222, Agriculture Building, Winnipeg, Manitoba, R3T 2N2, Canada. El Hadrami, Ismail, University Cadi Ayyad, Marrakech, Morocco. El Oirdi, Mohamed, Centre de Recherche en Amélioration Végétale, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada. Fobert, Pierre R., National Research Council Canada, Plant Biotechnology Institute, 110 Gymnasium Place, Saskatoon, Saskatchewan, S7N 0W9, Canada. González-Lamothe, Rocío, Centre de Recherche en Amélioration Végétale, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada. Hamed, Bathily, Centre de Recherche en Amélioration Végétale, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada. Harris, Linda J., Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada. Hijri, Mohamed, Institut de Recherche en Biologie Végétale, Université de Montréal, 4101 rue Sherbrooke Est, Montréal, Québec, H1X 2B2, Canada. Ichikawa, Tatsushi, Laboratory of Defense in Plant–Pathogen Interactions, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan. Kobayashi, Michie, Laboratory of Defense in Plant–Pathogen Interactions, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan. Lewis, Jennifer D., Department of Cell and Systems Biology, University of Toronto, 25 Willcocks Street, Toronto, Ontario, M5S 3B2, Canada. Maréchal, Alexandre, Department of Biochemistry, Université de Montréal, Montréal, Québec, Canada. Miyagawa, Noriko, Laboratory of Defense in Plant–Pathogen Interactions, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan. Moffett, Peter, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada; [email protected] Nasmith, Charles G., Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada. Contributors ix Ouellet, Thérèse, Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada. Parent, Jean-Sébastien, Department of Biochemistry, Université de Montréal, Montréal, Québec, Canada. Roy, Sébastien, Centre SÈVE, Département de biologie, Université de Sherbrooke, Sherbrooke, Québec, J1K 2R1, Canada. Sacco, Melanie A., Department of Biological Science, California State University, Fullerton, 800 North State College Blvd., Fullerton, CA 92831-3599, USA. Sansregret, Raphaël, Centre de Recherche en Amélioration Végétale, Département de Biologie, Université de Sherbrooke, 2500 Boulevard de l’Université, Sherbrooke, Québec, J1K 2R1, Canada. Schreiber, Karl, Department of Cell and Systems Biology, University of Toronto, 25 Willcocks Street, Toronto, Ontario, M5S 3B2, Canada. Simao-Beaunoir, Anne-Marie, Centre SÈVE, Département de biologie, Université de Sherbrooke, Sherbrooke, Québec, J1K 2R1, Canada. Song, Fengming, National Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, Zhejiang 310029, China; [email protected] St-Arnaud, Marc, Institut de Recherche en Biologie Végétale, Université de Montréal, 4101 rue Sherbrooke Est, Montréal, Québec, H1X 2B2, Canada. Subramaniam, Rajagopal, Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada; [email protected] Vojnov, Adrián A., Instituto de Ciencia y Tecnolgía Dr. Cesar Milstein, CONICET; [email protected] Wadsworth, Santiago, Institut de Biologie Moléculaire des Plantes, CNRS, 67084 Strasbourg Cedex, France. Yoshioka, Hirofumi, Laboratory of Defense in Plant–Pathogen Interactions, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan; [email protected] Yoshioka, Miki, Laboratory of Defense in Plant–Pathogen Interactions, Graduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan. Zhang, Huijuan, National Key Laboratory for Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, Zhejiang 310029, China. Zhang, Shuqun, Department of Biochemistry, University of Missouri- Columbia, MO 65211, USA. Zimmerman, Erin, Institut de Recherche en Biologie Végétale, Université de Montréal, 4101 rue Sherbrooke Est, Montréal, Québec, H1X 2B2, Canada; [email protected] This page intentionally left blank