DNA Damage, Mutagenesis, and DNA Repair

745 Pages·2010·21.43 MB·English

Journal of Nucleic Acids
DNA Damage, Mutagenesis,
and DNA Repair
Guest Editors: Ashis Basu, Suse Broyde, Shigenori Iwai, and Caroline Kisker
DNA Damage, Mutagenesis, and DNA Repair
Journal of Nucleic Acids
DNA Damage, Mutagenesis, and DNA Repair
Guest Editors: Ashis Basu, Suse Broyde, Shigenori Iwai,
and Caroline Kisker
Copyright©2010sage-HindawiPublishingCorporation.Allrightsreserved.
Thisisaspecialissuepublishedinvolume2010of“JournalofNucleicAcids.”Allarticlesareopenaccessarticlesdistributedunderthe
CreativeCommonsAttributionLicense,whichpermitsunrestricteduse,distribution,andreproductioninanymedium,providedthe
originalworkisproperlycited.
Journal of Nucleic Acids
Editorial Board
LuigiA.Agrofoglio,France Ramo´nEritja,Spain P.E.Nielsen,Germany
HiroyukiAsanuma,Japan MarinaGottikh,Russia SatoshiObika,Japan
AshisBasu,USA JohnA.Hartley,UK TatianaS.Oretskaya,Russia
BenBerkhout,TheNetherlands RolandK.Hartmann,Germany TobiasRestle,Germany
AnnL.Beyer,USA TapasKHazra,USA MitsuoSekine,Japan
ChristianeBranlant,France HyoutaHimeno,Japan JacekStawinski,Sweden
EmeryH.Bresnick,USA RobertHudson,Canada DmitryA.Stetsenko,UK
TomBrown,UK ShigenoriIwai,Japan HiroshiSugiyama,Japan
JanuszM.Bujnicki,Poland B.H.Kim,Korea ZucaiSuo,USA
JyotiChattopadhyaya,Sweden JørgenKjems,Denmark AkioTakenaka,Japan
GrigoryDianov,UK XingguoLiang,Japan YitzhakTor,USA
AidanDoherty,UK LuisA.Marky,USA DmitryVeprintsev,UK
JoachimEngels,Germany AtsushiMaruyama,Japan BirteVester,Denmark
Contents
DNADamage,Mutagenesis,andDNARepair,AshisBasu,SuseBroyde,ShigenoriIwai,andCarolineKisker
Volume2010,ArticleID182894,1pages
FromDNARadiationDamagetoCellDeath:TheoreticalApproaches,FrancescaBallarini
Volume2010,ArticleID350608,8pages
TheBiologicalandMetabolicFatesofEndogenousDNADamageProducts,SimonWanChanand
PeterC.Dedon
Volume2010,ArticleID929047,13pages
DNA-DestabilizingAgentsasanAlternativeApproachforTargetingDNA:MechanismsofActionand
CellularConsequences,Gae¨lleLengletandMarie-He´le`neDavid-Cordonnier
Volume2010,ArticleID290935,17pages
StructuralDeterminantsofPhotoreactivityofTriplexFormingOligonucleotidesConjugatedto
Psoralens,RajagopalKrishnanandDennisH.Oh
Volume2010,ArticleID523498,7pages
DifferentialToxicityofDNAAdductsofMitomycinC,JillBargonetti,EliseChampeil,andMariaTomasz
Volume2010,ArticleID698960,6pages
CellularResponsestoCisplatin-InducedDNADamage,AlakanandaBasuandSoumyaKrishnamurthy
Volume2010,ArticleID201367,16pages
IntracellularDNADamagebyLysine-AcetyleneConjugates,Wang-YongYang,QiangCao,
CatherineCallahan,CatalinaGalvis,Qing-XiangSang,andIgorV.Alabugin
Volume2010,ArticleID931394,6pages
CurrentStudiesintotheGenotoxicEffectsofNanomaterials,Cheng-TengNg,JasmineJ.Li,
Boon-HuatBay,andLin-YueLanryYung
Volume2010,ArticleID947859,12pages
FormationandRepairofTobaccoCarcinogen-DerivedBulkyDNAAdducts,BoHang
Volume2010,ArticleID709521,29pages
Formation,Repair,andGenotoxicPropertiesofBulkyDNAAdductsFormedfromTobacco-Specific
Nitrosamines,LisaA.Peterson
Volume2010,ArticleID284935,11pages
Smoking,DNAAdductsandNumberofRiskDNARepairAllelesinLungCancerCases,inSubjectswith
BenignLungDiseasesandinControls,MarcoPeluso,ArmelleMunnia,SaraPiro,AlessandraArmillis,
MarcelloCeppi,GiuseppeMatullo,andRiccardoPuntoni
Volume2010,ArticleID386798,7pages
InsightsintotheStructuresofDNADamagedbyHydroxylRadical:CrystalStructuresofDNADuplexes
Containing5-Formyluracil,MasaruTsunoda,TakeshiSakaue,SatokoNaito,TomokoSunami,NaokoAbe,
YoshihitoUeno,AkiraMatsuda,andAkioTake´naka
Volume2010,ArticleID107289,10pages
ElevatedLevelsofDNAStrandBreaksInducedbyaBaseAnalogintheHumanCellLinewiththeP32T
ITPAVariant,IrinaS.-R.Waisertreiger,MiriamR.Menezes,JamesRandazzo,andYouriI.Pavlov
Volume2010,ArticleID872180,11pages
SOD1IsEssentialfortheViabilityofDT40CellsandNuclearSOD1FunctionsasaGuardianofGenomic
DNA,EriInoue,KeizoTano,HanakoYoshii,JunNakamura,ShusukeTada,MasamiWatanabe,
MasayukiSeki,andTakemiEnomoto
Volume2010,ArticleID795946,11pages
Mus308ProcessesOxygenandNitrogenEthylationDNADamageinGermCellsofDrosophila,
NancyD´ıaz-Valde´s,MiguelA.Comendador,andL.Mar´ıaSierra
Volume2010,ArticleID416364,7pages
IstheCometAssayaSensitiveProcedureforDetectingGenotoxicity?,SatomiKawaguchi,
TakanoriNakamura,AyumiYamamoto,GishoHonda,andYuF.Sasaki
Volume2010,ArticleID541050,8pages
DevelopmentofaNovelFluorescenceAssayBasedontheUseoftheThrombin-BindingAptamerforthe
DetectionofO6-Alkylguanine-DNAAlkyltransferaseActivity,MariaTintore´,AnnaAvin˜o´,
FedericoM.Ruiz,Ramo´nEritja,andCarmeFa`brega
Volume2010,ArticleID632041,9pages
TheEmergingRoleofTelomeraseReverseTranscriptaseinMitochondrialDNAMetabolism,
DonnaM.GordonandJanineHertzogSantos
Volume2010,ArticleID390791,7pages
TargetingtheOB-FoldsofReplicationProteinAwithSmallMolecules,VictorJ.AncianoGranadillo,
JenniferN.Earley,SarahC.Shuck,MillieM.Georgiadis,RichardW.Fitch,andJohnJ.Turchi
Volume2010,ArticleID304035,11pages
TheRolesofUmuDinRegulatingMutagenesis,JayleneN.Ollivierre,JingFang,andPennyJ.Beuning
Volume2010,ArticleID947680,12pages
Error-ProneTranslesionDNASynthesisbyEscherichiacoliDNAPolymeraseIV(DinB)onTemplates
Containing1,2-dihydro-2-oxoadenine,MasakiHori,Shin-IchiroYonekura,TakehikoNohmi,PetrGruz,
HiroshiSugiyama,ShujiYonei,andQiu-MeiZhang-Akiyama
Volume2010,ArticleID807579,10pages
ArchitectureofY-FamilyDNAPolymerasesRelevanttoTranslesionDNASynthesisasRevealedin
StructuralandMolecularModelingStudies,SushilChandani,ChristopherJacobs,andEdwardL.Loechler
Volume2010,ArticleID784081,20pages
CharacterizationofaY-FamilyDNAPolymeraseetafromtheEukaryoticThermophileAlvinella
pompejana,SayoKashiwagi,IsaoKuraoka,YoshieFujiwara,KenichiHitomi,QuenJ.Cheng,JillO.Fuss,
DavidS.Shin,ChikahideMasutani,JohnA.Tainer,FumioHanaoka,andShigenoriIwai
Volume2010,ArticleID701472,13pages
DNAPolymerase:StructuralHomology,ConformationalDynamics,andtheEffectsofCarcinogenic
DNAAdducts,RichardG.FederleyandLouisJ.Romano
Volume2010,ArticleID457176,15pages
KineticApproachestoUnderstandingtheMechanismsofFidelityoftheHerpesSimplexVirusType1
DNAPolymerase,YaliZhu,JasonStroud,LipingSong,andDeborahS.Parris
Volume2010,ArticleID631595,15pages
MechanisticStudieswithDNAPolymerasesRevealComplexOutcomesfollowingBypassofDNA
Damage,RobertL.Eoff,Jeong-YunChoi,andF.PeterGuengerich
Volume2010,ArticleID830473,12pages
Pre-Steady-StateKineticAnalysisofTruncatedandFull-LengthSaccharomycescerevisiaeDNA
PolymeraseEta,JessicaA.Brown,LikuiZhang,ShanenM.Sherrer,John-StephenTaylor,
PeterM.J.Burgers,andZucaiSuo
Volume2010,ArticleID871939,11pages
ReplicationPasttheγ-Radiation-InducedGuanine-ThymineCross-LinkG[8,5-Me]TbyHumanand
YeastDNAPolymeraseη,ParomitaRaychaudhuryandAshisK.Basu
Volume2010,ArticleID101495,10pages
TheRoleofPCNAPosttranslationalModificationsinTranslesionSynthesis,MontaserShaheen,
IlanchezhianShanmugam,andRobertHromas
Volume2010,ArticleID761217,8pages
MouseWRNHelicaseDomainIsNotRequiredforSpontaneousHomologousRecombination-Mediated
DNADeletion,AdamD.Brown,AlisonB.Claybon,andAlexanderJ.R.Bishop
Volume2010,ArticleID356917,6pages
TheEffectofMitochondrialDysfunctiononCytosolicNucleotideMetabolism,ClausDesler,AnneLykke,
andLeneJuelRasmussen
Volume2010,ArticleID701518,9pages
BLMDeficiencyIsNotAssociatedwithSensitivitytoHydroxyurea-InducedReplicationStress,
KenzaLahkimBennani-Belhaj,Ge´raldineBuhagiar-Labarche`de,NadaJmari,RosineOnclercq-Delic,
andMouniraAmor-Gue´ret
Volume2010,ArticleID319754,8pages
Rev1,Rev3,orRev7siRNAAbolishesUltravioletLight-InducedTranslesionReplicationinHeLaCells:A
ComprehensiveStudyUsingAlkalineSucroseDensityGradientSedimentation,JunTakezawa,Yukio
Ishimi,NaomiAiba,andKouichiYamada
Volume2010,ArticleID750296,12pages
TranslesionSynthesisPolymerasesinthePreventionandPromotionofCarcinogenesis,
L.JayStallonsandW.GlennMcGregor
Volume2010,ArticleID643857,10pages
AMathematicalModelforDNADamageandRepair,PhilipS.CrookeandFritzF.Parl
Volume2010,ArticleID352603,7pages
BaseSequenceContextEffectsonNucleotideExcisionRepair,YuqinCai,DinshawJ.Patel,SuseBroyde,
andNicholasE.Geacintov
Volume2010,ArticleID174252,9pages
TrueLies:TheDoubleLifeoftheNucleotideExcisionRepairFactorsinTranscriptionandDNARepair,
NicolasLeMay,Jean-MarcEgly,andFre´de´ricCoin
Volume2010,ArticleID616342,10pages
InfluenceofXRCC1GeneticPolymorphismsonIonizingRadiation-InducedDNADamageandRepair,
SilviaSterponeandRenataCozzi
Volume2010,ArticleID780369,6pages
StimulationofDNAGlycosylaseActivitiesbyXPCProteinComplex:RolesofProtein-Protein
Interactions,YuichiroShimizu,YasuhiroUchimura,NaoshiDohmae,HisatoSaitoh,FumioHanaoka,
andKaoruSugasawa
Volume2010,ArticleID805698,12pages
CoincidentInVitroAnalysisofDNA-PK-Dependentand-IndependentNonhomologousEndJoining,
CynthiaL.Hendrickson,ShubhadeepPurkayastha,ElzbietaPastwa,RonaldD.Neumann,
andThomasA.Winters
Volume2010,ArticleID823917,11pages
SelectiveIncisionoftheα-N5-Methyl-FormamidopyrimidineAnomerbyEscherichiacoliEndonuclease
IV,PlamenP.Christov,SurajitBanerjee,MichaelP.Stone,andCarmeloJ.Rizzo
Volume2010,ArticleID850234,10pages
RegulationofHuRbyDNADamageResponseKinases,HyeonHoKim,KotbAbdelmohsen,
andMyriamGorospe
Volume2010,ArticleID981487,8pages
DNAMismatchRepairinEukaryotesandBacteria,KenjiFukui
Volume2010,ArticleID260512,16pages
H2AXPhosphorylation:ItsRoleinDNADamageResponseandCancerTherapy,MonikaPodhorecka,
AndrzejSkladanowski,andPrzemyslawBozko
Volume2010,ArticleID920161,9pages
DifferentialDynamicsofATR-MediatedCheckpointRegulators,DanilO.Warmerdam,RolandKanaar,
andVeroniqueA.J.Smits
Volume2010,ArticleID319142,16pages
RoleofTopoisomeraseIIβinDNADamageResponsefollowingIRandEtoposide,NicolaJ.Sunter,
IanG.Cowell,ElaineWillmore,GaryP.Watters,andCarolineA.Austin
Volume2010,ArticleID710589,8pages
StructuralBiologyofDNARepair:SpatialOrganisationoftheMulticomponentComplexesof
NonhomologousEndJoining,TakashiOchi,BancinyaneLynnSibanda,QianWu,DimitriY.Chirgadze,
VictorM.Bolanos-Garcia,andTomL.Blundell
Volume2010,ArticleID621695,19pages
TheRolesofSeveralResiduesofEscherichiacoliDNAPhotolyaseintheHighlyEfficientPhoto-Repairof
CyclobutanePyrimidineDimers,LeiXuandGuopingZhu
Volume2010,ArticleID794782,7pages
ParametersofReserpineAnalogsThatInduceMSH2/MSH6-DependentCytotoxicResponse,
AksanaVasilyeva,JillE.Clodfelter,MichaelJ.Gorczynski,AnthonyR.Gerardi,S.BruceKing,
FreddieSalsbury,andKarinD.Scarpinato
Volume2010,ArticleID162018,13pages
EarlyStepsintheDNABaseExcisionRepairPathwayofaFissionYeastSchizosaccharomycespombe,
KyoichiroKanamitsuandShogoIkeda
Volume2010,ArticleID450926,9pages
NonhomologousDNAEndJoininginCell-FreeExtracts,SheetalSharmaandSatheesC.Raghavan
Volume2010,ArticleID389129,11pages
BRCA1FormsaFunctionalComplexwithγ-H2AXas
aLateResponsetoGenotoxicStress,SusanA.Krum,EstherdelaRosaDalugdugan,
GustavoA.Miranda-Carboni,andTimothyF.Lane
Volume2010,ArticleID801594,9pages
ModulationoftheRibonucleotideReductase-AntimetaboliteDrugInteractioninCancerCellLines,
JunZhou,PaulaOliveira,XueliLi,ZhengmingChen,andGeroldBepler
Volume2010,ArticleID597098,10pages
OverviewofDNARepairinTrypanosomacruzi,TrypanosomabruceiandLeishmaniamajor,
DanielleGomesPassos-Silva,MatheusAndradeRaja˜o,PedroHenriqueNascimentodeAguiar,Joa˜oPedro
Vieira-da-Rocha,CarlosRenatoMachado,andCarolinaFurtado
Volume2010,ArticleID840768,14pages
DNADamageInducedbyAlkylatingAgentsandRepairPathways,NatsukoKondo,AkihisaTakahashi,
KojiOno,andTakeoOhnishi
Volume2010,ArticleID543531,7pages
MolecularMechanismsofUltravioletRadiation-InducedDNADamageandRepair,RajeshP.Rastogi,
Richa,AshokKumar,MadhuB.Tyagi,andRajeshwarP.Sinha
Volume2010,ArticleID592980,32pages