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An inventory of irrigation structures in the Upper Clark Fork River Drainage, Montana : 2010 annual progress report PDF

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s 631.7 F2IIS 2010 AnInventoryofIrrigationStructuresintheUpperClarkFork RiverDrainage,Montana 2010AnnualProgressReport USFWSAgreementNumber-601818J270 WillSchreck,RyanKreiner,BradLiermann,andJasonLindstrom MontanaFish,WildlifeandParks MontanaStateLibrary 3 0864 1006 2563 4 Coverphotograph:Irrigationditch(divertedfromLostCreek,MontanaatRM7.6)on privategrazinglandnearWarmSprings,Montana. 1 TableofContents Introduction 4 Methods 6 IrrigationStructures 6 FishSampling 6 TemperatureandDischargeMonitoring 7 RadioTelemetry 8 InventoryResults 9 RanchCreek 9 StonyCreek 10 BeaverCreek 1 RockCreek 12 WestForkRockCreek 13 RossForkRockCreek 14 MiddleForkRockCreek 16 EastForkRockCreek 17 HarveyCreek 22 SouthForkLowerWillowCreek 23 GirdCreek 24 BoulderCreek 24 GoldCreek 26 ClarkForkRiver 30 CottonwoodCreek 31 DempseyCreek 34 RacetrackCreek 35 LostCreek 37 WarmSpringsCreek 38 StormLakeCreek 39 BrownsGulch 40 Summary 41 RadioTelemetryResults 44 FutureProjects 45 LiteratureCited 46 3 . Introduction AgricultureisaprevailingeconomicpresenceinthewesternUnitedStates. InMontana alone,themarketvalueofagricultureisnearly$2billionperyear(Christensen2005). GiventhearidnatureofMontanasummers,itisoftennecessarytodivertwaterfrom riversandstreamstosupportagriculture. Theoperationofirrigationstructuressuchas ditchescanhavedramaticeffectsonthehealthofthesesystemsbyentrainingresident fishesandde-wateringthestreamchannel. InwesternMontana,nativefishessuchas westslopecutthroattroutOncorhynchusclarkilewisiandthefederallythreatenedbull troutSalvelinusconfluentusarelikelyathighriskforentrainmentintoirrigationditches duetotheirmigratorylifehistories. Thesespeciesareespeciallyatriskaspost-spawn adultsandjuvenilesout-migratingfromspawningorrearingtributaries(Bahn2007). Also,duetothethermalsensitivityofbulltroutandwestslopecutthroattrout,elevated streamtemperaturesaccompanyingchannelde-wateringarelikelytoimpactthese species. In2009,MontanaFish,Wildlife&Parks(MFWP)receivedagrantfromtheU.S.Fish andWildlifeService(USFWS)onbehalfoftheFisheriesRestorationandIrrigation MitigationAct(FRIMA)tosurveytheUpperClarkForkRiverBasin'sirrigation systems. Theobjectivesofthisstudywereto: 1 InventorydiversionsonprioritizedtributariesintheUpperClarkForkRiver Basintoaidinthedevelopmentoffishpassage/screeningplans. 2. Providerecommendationsforsite-specificpassageandentrainmentsolution optionsforprioritizedstreams. 3. Design,plan,andimplement,asappropriate,identifiedfishpassageandscreening projectsasfundsbecomeavailableviatheacceptedFRIMAproposalandranking processand/orfromotherfundingsources. TheareachosenforthisstudyincludestheClarkForkRiveranditstributariesfromthe headwatersofSilverBowCreekdownstreamtoitsconfluencewithRockCreeknear Clinton,MT(Figure1). ThisincludesmajoragriculturalregionssuchastheDeerLodge andFlintCreekvalleys,aswellastheRockCreekvalley,whichislessimpactedby agricultureandirrigation,butcontainshighpopulationsofnativefishspeciessuchasbull troutandwestslopecutthroattrout. Irrigationstructuresinventoriedforthisstudywere chosenbasedontheirpresumedimpactontheoverallClarkForkRiverfishery,aswellas theirsuspectedentrainmentofnativefishspecies. Thisreportincorporatesdatacollectedintensivelyin2009and2010,aswellaspast samplingeffortsfrom2007and2008. Thisreportisassembledinasimilarmannertothe AnnualProgressReportsubmittedin2009,includingaprioritizationlistofcritical diversions. Figure1. SurveylocationswithintheUpperClarkForkRiverBasinbyyear. Methods IrrigationStructures Briefdescriptionsofthediversionandheadgatestylesobservedateachlocationwere recorded. Thisinformationwillbeusefulforfutureplanningandmitigation. Duringthis inventorycommondiversionstylesincludedgravelandboulderbermsorpinandplank structures,andcommonheadgatestylesincludedWatermanC-10slidegates,Waterman R-5slidegates,andwoodengateswithstopboards(SeeMDNRC2001). WatermanC-10 headgatesareprefabricatedmetalstructures,adjustablewithscrew-downgates,andR-5 headgatesaresimilarinconstruction,butareunabletoseal,thereforeallowingleakage pastthegatewhenclosed. FishSampling Electrofishingwasusedtocollectfishesatthesamplesites. Thefocuswastoobtain informationonthecompositionoffishspeciesentrainedintheditches. Inmost situations,asingle100m(unlesslengthrestrictedbyde-wateringoraccess) electrofishingpasswasperformed. Thisprovidedinformationonspeciescomposition, lengthfrequency,andcatch-per-unit-effort(CPUE). Mostditcheswereelectrofishedfor 100mdownstreamfromtheheadgate. Atseveralsites,thehighturbidityintheditch resultedinpoorvisibilityanditwasmoreeffectivetosampleinanupstreamdirection. Intheseinstances,eitherablocknetwasplacedattheupstreamendofthesectionanda singleupstreampasswasmade,ortheheadgatefunctionedasabarrierandnoblocknet wasinstalled. Oncertainditchesmultipleelectrofishingsectionswereselectedfarther downstreamtofurtherdocumententrainment. Additionally,inditchesexpectedto containhighdensitiesofentrainedfish,multiple-passdepletionswereconductedto generatefishpopulationestimateswithconfidenceintervals. Inthesesituations,block- netswereused,multiplepassesweremadethroughthesection,andcapturedfishwere removedandplacedasideinlive-cars. Afterallpasseswerecompleted,thefishwere measuredandpopulationestimateswerecalculatedusingthemaximumlikelihood estimatorprovidedbyMontanaFish,Wildlife&Parks'FA+fisheriesanalysissoftware. FisheswerecollectedwithaSmith-RootLR-24Electrofisher. Ateachsite,capturedfish wereidentifiedtospecies,weighed,measuredandreleased. Allfishdatawererecorded onstandardMFWPelectrofishingdatasheetsusingMFWPspeciesabbreviations. These abbreviationsarealsousedinthetablespresentedintheresultssection. Belowarethe abbreviationsandthespeciestheyrepresent. BULL=bulltrout EB=brooktroutSalvelinusfontinalis LCSU=largescalesuckerCatostomusmacrocheilus LL=browntroutSalmotrutta LNSU=longnosesuckerCatostomuscatostomus LNDC=longnosedaceRhinichthyscataractae MWF=mountainwhitefishProsopiumwilliamsoni ONC=unidentifiableOncorhynchusspecies RB=rainbowtroutOncorhynchusmykiss RSSH=redsideshinerRichardsoniusbalteatu SLCOT=slimysculpinCottuscognatus SU=suckerspecies WCT=westslopecutthroattrout DataSummary Fisherydatawassummarizedbyspeciesandincludedthenumberoffishcapturedcatch- per-unit-effort(CPUE)ordepletionestimates(standardizedtonumberoffishper100m), meanandrangeoffishlengths,andpercentspeciescomposition. Tablesdisplayingthis informationwereassembledforeachditchsampled. Additionally,length-frequency histogramswereconstructedforspecieswith>5individualscollectedperditchto illustratelengthdistributions. Thesedataareprovidedasanappendix(AppendixA). For thepurposeofthisreport,ditcheswerenamedfortheapproximaterivermile(RM) locationofthediversionandheadgateorthewateruser. Photographsweretakenofmost ofthediversionstructuresandditches(AppendixB). Fishpopulationdataforstreams discussedinthisreportweretakenfromLindstrometal.2008,Liermannetal.2009,or unpublishedelectrofishingdatacollectedin2009. Inmostditches,notallslimysculpinandothernon-salmonidspecies(e.g.,longnose sucker,largescalesuckerandlongnosedace)werecapturedorenumerated. Thus,these specieswerecategorizedasrare,commonorabundant. Specieswith1-10individuals wereconsideredrare,11-50individualsconsideredcommon,and>51individuals consideredabundant. Thepresenceofan"R"inthetablesofthisreportsignifiesthe specieswasrare,a"C"signifiescommonandan"A"signifiesabundant. AttheendoftheElectrofishingResultssection,allditchessampledweresummarized andgivenanentrainmentrating(Table24). Thisentrainmentratingwasbaseduponthe numberoffishentrainedintheditch,withnativespeciesreceivinghigherpriority. The entrainmentratingscoresusedinthisreportwerelow,medium,andhigh. TemperatureandDischargeMonitoring Sincethediversionofwaterforirrigationmayimpactdownstreamwatertemperatures, streamtemperaturesweremonitoredinseveralstreamschosenforthisstudy. In2007 and2009,oneormorethermographsweredeployedinthetargetdrainages(ONSET ComputerCorp,Model:HOBOWaterTempProV2). Tomostaccuratelydeterminethe effectsofde-wateringonstreamtemperature,thermographsweredeployedinsome streamsbothaboveandbelowmajordiversions. Incertainstreamshowever,onlyone thermographwasdeployed,generallynearthemouthofthestream,belowalldiversions. TemperaturesweremeasuredindegreesCelsius(°C)everyhalfhour,withtemperatures above15°Cconsideredharmfultobulltroutandwestslopecutthroattrout(Behnke 2002). ResultsaredisplayedinAppendixC. Atseverallocations,streamdischargewasmeasuredusingaMarsh-McBirneyflowmeter andatopsetwadingrod. Whenfeasible,dischargewasmeasuredintheditchandthe adjacentstream. Meanvelocitieswereobtainedovera20secperiodusingthefixed pointaverage(FPA)settinganddischargewascalculatedascubicfeetpersecond(cfs). Inthesummerof2010,acrewworkingforMontanaTroutUnlimited(TU),contractedto inventoryirrigationdiversionswithintheUpperClarkForkRiverdrainage,collected manyofthemeasurementsinPowellandDeerLodgecounties. Thesedischarge estimatesweresummarizedinareportsubmittedtotheWatershedRestorationCoalition (WRC)oftheUpperClarkForkinwinter2010,andseveralwereincludedinthisreport (TUandWRC2010). RadioTelemetry InApril2009,aradiotelemetryprojectwasinitiatedwithintheUpperClarkForkRiver. ThisstudyconsistedoftaggingtroutcapturedfromthemainstemClarkForkand observingtheirmovementsthroughoutthesystem(MayfieldandMcMahon2010). Fish speciesselectedfortagginginthisstudywereroughlyproportionaltooverallspecies compositionintheClarkForkRiver. In2009,100troutcomprisedof72browntrout,15 westslopecutthroattrout,6suspectedwestslopecutthroat/rainbowtrouthybrids,6 rainbowtrout,and1bulltroutwereimplantedwithradiotags. In2010,anadditional149 troutweretagged. The2010fishconsistedof104browntrout,33westslopecutthroat trout,6cutthroat/rainbowtrouthybrids,3bulltroutand3rainbowtrout. Threeofthe objectivesforthisstudyaretoidentify1)criticalspawningandrearinghabitat,2) possibleimpedimentstobothup-anddownstreamfishmigration,and3)possible limitingfactorsandcausesofmortalitytotroutintheUpperClarkForkRiver. Any resultsfromthetelemetrystudypertinenttothisproject'sobjectivesaredisplayedinthe RadioTelemetryResultssectionofthisreport. Thetelemetrystudywillcontinueuntil thewinterof2011. InventoryResults RanchCreek RanchCreekisatributarytoRockCreekandentersthedrainageatapproximatelyRM 11.5(Figure1). Theentireupperportionofthecreekislocatedonlandsadministeredby theLoloNationalForest. Mostofthelowerportionrunsthroughprivatelandwiththe exceptionoftheU.S.ForestService(USFS)campgroundlocatedneartheconfluenceof GrizzlyCreek. Landuseonthelowercreekislimitedtoafewprivateresidencesand smallhorsepastures. Throughpastelectrofishingsurveys,nativewestslopecutthroat troutandbulltroutareknowntoinhabitRanchCreek. MigratorybulltroutfromRock CreekarealsoknowntospawninRanchCreek. Twosmall(<2CFS)ditchesdrawwaterfromRanchCreekonitslowerend,belowthe GrizzlyCreekcampground(Figure1). Electrofishingsurveyswerecompletedinthese ditchesinAugust2009and2010,withallsectionsmeasuring100minlength. Theupper ditch,locatedatRM1.1,isoutfittedwithametalR-5styleheadgateandwaterisdiverted intothisditchbyagravelberm(AppendixB). Twosectionsonupperditch(RM1.1) weresampled,oneneartheheadgateandoneapproximatelyonemiledownstreamat NortonUSFScampground. In2009,atotalof11fishwerecapturedbelowtheheadgate oftheupperditch(Table1,AppendixA). Eightofthesefishwerewestslopecutthroat trout,alongwithtwobrooktroutandonebrowntrout. Slimysculpinwerealsopresent butrareinthissection. Nofishwerecapturedinthelowersectionofthisditchnearthe Nortoncampground. In2010,atotalof26fishwerecollectedbelowtheheadgateofthe upperditch,comprisedoffourteenwestslopecutthroattrout,fourbrowntrout,four unidentifiableOncorhynchusspp,threebrooktroutandonerainbowtrout. In2010, slimysculpinwereabundantinthissection. Againin2010,nofishwerecapturedatthe lowersectiononthisditch(Nortoncampground). Thelowerofthetwoditches,located atRM0.1,hasnoformalheadgate,butwaterentersthisditchfromasidechannelon RanchCreek. Onbothoccasionsthelowerditch(RM0.1)wassampledbelowitspoint ofdiversionneartheNortoncampground. In2009,fivewestslopecutthroattroutwere collectedalongwithtwobrooktrout(Table1,AppendixA). Slimysculpinwerealso abundantinthesection. In2010,tenbrowntrout,eightbrooktrout,threeOncorhynchus species,andonerainbowtroutwerecollected(Table1,AppendixA). Slimysculpin wereagainabundant. Althoughnobulltroutwereobservedintheseditchesin2009or2010,pastresearch foundatleastonehasbeenentrainedintheirrigationditchesonlowerRanchCreek. Approximatelytenyearsago,aradio-taggedadultbulltroutwasentrainedinthelower ditch(RM0.1)duringaradiotelemetrystudyandpresumablydiedintheditch(radio taggedfishmademovementsintheditchbuttheradiotransmitterwaslaterrecoveredin theditch-BradLiermann,MontanaFish,WildlifeandParks,personalcommunication). Table1. Electrofishingdatacollectedduring2009and2010inditchesonRanchCreek. Ditch Year Species Number Fishper Mean Length Species Name Sampled ofFish 100m Length Range Comp (Section) Captured (CPUE) (mm) (mm) RM1.1 2009 WCT 8 8 121 78-187 73 (Headgate) LL 1 1 96 96 9 EB 2 2 83 50-115 18 2010 WCT 14 14 95 35-161 54 LL 4 4 86 46-135 15 ORNBC 41 41 7870 717-792 145 EB 3 3 132 115-163 12 SLCOT A - - - - RM1.1 2009 NO FISH „ _ _ _ (Norton) 2010 NO FISH - - - - RM0.1 2009 WCT 5 5 91 78-112 71 (Headgate) EB 2 2 163 133-193 29 SLCOT R - - - - 2010 LL 10 10 138 78-180 45 RB 1 1 130 130 5 ONC 3 3 58 32-109 14 EB 8 8 157 124-235 36 SLCOT A - - - - DischargewasmeasuredwithinbothditchesandupstreamoftheupperditchatRM1.1 inmainstemRanchCreekonAugust10,2010. TheditchatRM1.1wasreceiving1.2 cfs,approximately4%ofthemainstemdischargeat28.6cfs. TheditchatRM0.1near themouthofRanchCreekwasreceiving0.8cfs,approximately3%oftheremaining mainstemdischarge(estimatedat27.4cfs). StonyCreek StonyCreekisatributarytoRockCreekandentersthedrainageatapproximatelyRM 38.4(Figure1). RoughlyonemileoflowerStonyCreekflowsthroughprivateland, whileupperStonyCreekflowsthroughNationalForestland. ForestRoad241(FR241) followsthelowercreekfornearlyfivemiles,whiletheremainderofthedrainageis roadless. FishpopulationsinupperStonyCreekarecomprisedentirelyofnative westslopecutthroattroutandbulltroutandamixofnativeandnon-nativespeciesare presentinthelowerportionofthedrainage. Pastelectrofishingsurveysfoundnon-native browntroutandrainbowtroutinlowerStonyCreek,withvisualevidenceof hybridizationbetweenwestslopecutthroattroutandrainbowtrout(Liermannetal.2008). 10

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